genome.fa.s1180.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001180.1 Hibiscus syriacus cultivar Beakdansim tig00002346_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41948

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1568--1621	20	2.8	20	91	2	92	37	24	20	18	1.94
1617--1669	14	3.4	14	72	22	52	11	24	20	43	1.85
1612--1689	33	2.4	33	89	4	113	12	25	21	39	1.89
1661--1754	20	4.7	20	95	0	170	17	23	25	34	1.96
3851--3886	3	12.0	3	87	0	54	0	27	0	72	0.85
3850--3886	12	3.0	13	92	7	60	0	27	0	72	0.84
3851--3886	15	2.4	15	100	0	72	0	27	0	72	0.85
4062--4121	24	2.5	24	80	0	75	40	16	18	25	1.91
4956--5022	20	3.3	20	93	4	109	23	19	25	31	1.98
5009--5121	20	5.7	20	93	0	181	21	20	19	38	1.93
4994--5121	40	3.2	40	87	2	123	21	20	20	37	1.94
4996--5121	60	2.1	60	85	2	164	22	19	19	38	1.94
5657--5704	25	1.9	25	100	0	96	20	16	33	29	1.95
9053--9133	27	3.0	27	100	0	162	48	11	7	33	1.67
16223--16371	60	2.5	60	81	8	178	30	24	5	40	1.77
23377--23433	29	2.0	29	86	6	80	31	21	5	42	1.75
24162--24258	29	3.3	29	78	8	117	26	31	31	9	1.88
24263--24339	23	3.5	23	67	16	72	18	15	44	22	1.87
24262--24355	43	2.2	43	96	1	170	17	15	44	22	1.86
24286--24354	21	3.2	21	66	18	61	17	15	46	20	1.84
24419--24551	65	2.0	65	83	0	167	24	32	15	27	1.95
24937--24980	21	2.1	21	86	0	61	29	2	13	54	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24950--25015	28	2.4	28	80	10	89	31	1	10	56	1.43
24979--25083	42	2.4	45	75	15	114	41	0	8	49	1.33
25502--25562	17	3.4	17	72	16	59	42	0	11	45	1.40
25795--25853	26	2.3	25	75	18	66	49	5	1	44	1.34
26767--27052	49	5.8	49	94	1	511	42	0	11	45	1.42
26946--27028	21	3.6	21	70	26	53	46	1	6	45	1.35
27050--27084	17	2.0	18	94	5	63	57	0	5	37	1.23
27263--27317	12	4.7	12	86	6	69	52	0	3	43	1.18
27339--27501	26	6.3	26	86	7	224	46	2	7	44	1.44
27330--28015	52	13.0	52	70	17	330	45	2	8	42	1.50
27339--28015	78	8.5	77	70	17	327	45	2	8	42	1.50
27491--27536	9	5.2	9	84	5	67	54	0	8	36	1.32
27491--27597	26	4.1	26	81	4	117	47	0	8	42	1.40
27404--27581	87	2.1	86	82	8	211	47	1	7	44	1.38
27717--28015	26	11.6	26	83	7	299	46	2	7	43	1.43
27266--28015	127	5.9	127	72	16	510	45	2	8	42	1.49
27798--27852	19	3.1	18	75	24	53	41	0	9	49	1.34
27809--27842	8	4.2	8	85	14	52	41	0	8	50	1.34
27854--27951	3	33.7	3	74	6	67	53	2	5	39	1.35
30543--30654	30	4.0	30	72	20	109	43	9	1	44	1.47
30554--30599	22	2.1	22	95	0	83	36	13	2	47	1.54
30549--30629	22	3.3	22	71	23	72	41	12	1	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30846--30895	21	2.4	21	86	6	66	56	14	2	28	1.49
30912--30966	18	3.4	18	65	31	52	52	9	0	38	1.33
30981--31067	38	2.4	36	75	21	99	47	11	0	41	1.40
31082--31146	28	2.3	29	82	10	82	46	15	1	36	1.55
31311--31341	15	2.1	15	93	0	53	6	32	6	54	1.51
31566--31642	29	2.7	29	91	4	120	18	31	28	22	1.97
31700--31793	29	3.2	28	88	5	98	20	35	29	14	1.93
31712--31800	29	3.1	29	95	0	151	17	37	29	15	1.91
34862--34908	20	2.3	20	96	0	85	23	25	8	42	1.82
37062--37158	42	2.3	42	87	3	133	27	35	19	17	1.94
37275--37327	21	2.5	21	81	0	70	18	11	33	35	1.87
37352--37474	42	3.0	42	90	1	185	21	12	30	34	1.90
37783--37847	21	3.1	21	93	0	112	21	41	16	20	1.90
37783--37858	21	3.6	21	89	0	107	23	38	17	21	1.93
41400--41461	23	2.7	23	90	2	90	20	25	30	22	1.98

Tables:   1

The End!