genome.fa.s1182.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001182.1 Hibiscus syriacus cultivar Beakdansim tig00002348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122981

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540--587	19	2.6	18	83	6	51	33	29	12	25	1.92
603--689	20	4.4	19	73	13	68	32	25	17	25	1.97
603--689	40	2.2	40	82	0	102	32	25	17	25	1.97
640--771	20	6.7	20	74	13	105	38	24	16	20	1.92
683--767	39	2.2	39	95	0	152	38	25	15	20	1.91
739--779	19	2.2	19	86	0	55	39	26	17	17	1.91
884--931	22	2.2	22	92	0	78	22	45	12	18	1.83
1274--1321	19	2.5	20	89	6	80	52	18	14	14	1.75
2951--3000	21	2.4	21	89	0	82	22	16	28	34	1.95
3404--3443	21	1.9	21	89	0	62	22	35	20	22	1.96
4930--4979	14	3.6	14	83	5	75	28	0	20	52	1.47
4922--4980	27	2.2	27	100	0	118	27	0	18	54	1.44
5389--5424	18	2.0	18	94	0	63	16	2	25	55	1.55
7841--7874	12	2.8	12	90	0	50	14	0	29	55	1.40
8469--8507	15	2.5	15	83	4	51	66	0	5	28	1.12
8576--8638	27	2.3	27	100	0	126	22	4	33	39	1.75
8712--8776	19	3.4	19	89	2	94	32	10	20	36	1.87
8782--8955	40	4.3	40	78	11	194	20	16	22	40	1.91
8806--8968	20	8.1	20	75	16	126	21	17	22	38	1.93
8782--8977	60	3.3	60	78	11	238	20	16	22	39	1.92
20869--20899	16	1.9	16	93	0	53	25	29	19	25	1.99
22327--22370	22	2.0	22	100	0	88	36	18	13	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24917--24990	38	1.9	38	86	0	103	22	21	20	35	1.96
38416--38451	18	2.0	18	89	10	56	33	2	0	63	1.08
38764--38812	25	2.0	25	84	8	64	34	12	6	46	1.66
49998--50030	16	2.1	16	100	0	66	57	24	12	6	1.57
50095--50169	10	7.7	10	69	21	61	57	21	12	9	1.62
50099--50163	16	4.1	16	95	0	121	56	23	12	7	1.61
50910--50967	10	5.4	10	75	15	53	56	22	8	12	1.62
50916--50980	24	2.7	24	85	0	94	55	23	9	12	1.65
50928--50981	14	4.1	14	75	18	53	53	24	11	11	1.68
54495--54532	14	2.7	14	91	0	58	44	5	44	5	1.49
55641--55686	24	1.9	24	81	0	56	13	15	28	43	1.83
55668--55716	14	3.8	14	70	29	54	10	10	22	57	1.62
55651--55736	24	3.6	24	87	0	109	12	11	20	54	1.69
65229--65264	17	2.1	18	89	5	56	58	0	22	19	1.40
69316--69353	6	6.3	6	96	0	67	28	0	36	34	1.58
76475--76531	29	2.0	29	86	6	80	50	0	1	47	1.11
76500--76732	120	2.0	120	83	6	296	45	8	8	37	1.66
78589--78946	139	2.6	138	86	2	495	28	18	14	38	1.90
79015--79324	111	2.8	112	91	2	498	27	20	15	36	1.93
79416--79490	31	2.4	31	93	0	123	38	20	16	25	1.92
79447--79792	76	4.6	76	92	1	543	34	21	19	23	1.96
79749--79823	31	2.4	31	90	0	123	37	20	17	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79678--79897	107	2.1	105	89	1	332	35	21	19	23	1.95
79325--79995	257	2.6	254	84	5	791	34	21	19	23	1.96
79785--79994	74	2.8	75	91	1	323	34	22	18	24	1.96
79325--79995	333	2.0	333	94	0	1182	34	21	19	23	1.96
79597--79973	181	2.1	182	91	1	603	35	21	19	23	1.96
79998--80321	165	2.0	166	92	0	542	38	12	13	35	1.83
80836--80895	22	2.7	22	86	0	93	41	11	11	35	1.78
87790--87828	15	2.6	15	87	0	51	64	10	12	12	1.51
89244--89307	21	3.2	20	70	22	55	64	0	4	31	1.14
89278--89337	25	2.5	23	81	10	68	61	0	6	31	1.22
89793--89849	29	2.0	29	86	6	80	50	0	1	47	1.11
89905--89946	20	2.2	19	86	4	57	64	2	0	33	1.07
89818--90050	120	2.0	120	84	5	312	45	9	8	37	1.66
90139--90168	3	10.0	3	92	0	51	63	0	3	33	1.11
97994--98067	32	2.3	32	81	4	87	47	2	2	47	1.30
104528--104569	21	2.0	20	86	4	57	23	0	30	45	1.53
105815--105875	2	30.5	2	100	0	122	50	0	0	49	1.00
106989--107040	21	2.5	20	82	11	61	25	25	17	32	1.97
107520--107555	11	3.4	11	88	3	56	11	22	8	58	1.59
107916--107953	20	1.9	20	88	0	58	18	13	34	34	1.89
107782--107955	91	1.9	91	86	6	246	28	15	24	31	1.96
113443--113499	21	2.7	21	94	2	96	45	21	17	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117305--117422	36	3.2	36	91	3	175	33	20	21	24	1.97
117408--118936	214	7.2	214	90	3	2391	33	15	18	32	1.93
117993--118094	42	2.5	41	79	4	107	24	22	21	31	1.98
118194--118307	42	2.7	43	76	8	119	26	21	21	31	1.98
117408--118936	427	3.6	424	90	3	2399	33	15	18	32	1.93
118856--118988	42	3.2	41	72	6	124	26	18	21	34	1.96
118835--118988	83	1.9	83	90	0	245	26	19	20	33	1.97
120100--120326	21	11.0	21	75	14	197	21	21	22	33	1.97
120106--120246	60	2.3	61	93	3	239	21	21	24	33	1.97
120106--120326	42	5.3	42	87	7	276	21	21	23	33	1.97

Tables:   1

The End!