genome.fa.s1184.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001184.1 Hibiscus syriacus cultivar Beakdansim tig00002351_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106578

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466--695	20	11.4	20	78	10	238	19	17	25	36	1.94
466--732	40	6.7	41	84	9	315	18	17	25	37	1.93
462--695	60	3.9	60	80	8	264	19	18	25	36	1.94
680--732	20	2.7	19	85	8	72	15	18	24	41	1.89
782--834	19	2.7	19	73	2	61	16	18	30	33	1.94
5131--5169	15	2.6	15	100	0	78	28	12	35	23	1.91
9314--9351	3	12.7	3	94	0	67	2	34	0	63	1.09
10696--10851	31	5.0	31	95	1	269	19	17	23	39	1.92
13987--14017	16	1.9	16	100	0	62	48	19	6	25	1.72
16715--16739	3	8.3	3	100	0	50	68	0	0	32	0.90
17159--17239	33	2.5	33	91	0	135	16	38	12	33	1.85
17977--18089	33	3.4	33	95	2	192	22	14	30	32	1.93
26009--26110	34	2.8	37	88	10	158	43	14	13	28	1.84
26006--26144	37	3.8	37	83	9	169	41	14	13	30	1.84
26500--26542	18	2.5	17	85	7	61	25	4	2	67	1.22
27034--27063	2	15.0	2	92	0	51	46	0	0	53	1.00
30781--30839	7	8.1	8	78	17	51	81	1	16	0	0.78
30781--30878	27	3.8	24	82	13	106	80	3	15	1	0.89
30787--30877	25	3.5	24	71	21	58	80	3	15	1	0.90
30787--30876	20	4.5	20	77	16	89	80	3	15	1	0.91
31484--31527	22	2.0	22	91	8	72	38	22	11	27	1.88
31955--31990	18	2.0	18	94	0	63	16	8	33	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32464--32533	36	1.9	36	94	0	122	22	22	14	40	1.90
32484--32943	65	6.8	64	71	13	242	29	20	11	38	1.87
32549--32811	36	7.4	36	78	9	263	27	19	13	39	1.89
32549--32818	73	3.8	73	75	10	297	27	19	13	40	1.88
32591--32775	102	1.8	102	89	2	291	28	17	14	39	1.89
32464--32874	138	3.0	138	85	0	536	28	20	12	38	1.89
33547--34003	105	4.3	107	88	3	604	33	25	18	21	1.96
33550--34002	211	2.1	212	86	3	617	33	26	18	21	1.96
34550--34651	34	2.8	37	89	10	167	43	14	14	27	1.85
34550--34685	37	3.8	35	84	9	168	41	13	14	29	1.85
35382--35483	34	2.8	37	89	10	167	43	14	14	27	1.85
35382--35517	37	3.8	35	84	9	168	41	13	14	29	1.85
34161--35830	832	2.0	832	100	0	3340	34	18	19	27	1.95
35873--35915	18	2.5	17	81	7	52	25	2	2	69	1.12
46370--46403	17	2.0	17	88	0	50	23	5	0	70	1.09
47698--47777	42	1.9	41	82	10	99	20	0	58	21	1.39
47822--47898	24	3.2	24	64	14	68	16	1	49	32	1.54
47722--48870	48	23.8	47	71	10	509	17	4	49	28	1.66
47722--48726	144	7.0	143	81	6	861	18	3	49	28	1.65
48106--48196	27	3.6	26	69	23	77	20	2	48	28	1.62
48110--48666	291	1.9	289	93	2	963	18	3	47	29	1.66
47722--48762	96	10.8	96	74	9	615	18	4	49	28	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47834--48726	144	6.2	142	83	5	870	18	3	48	28	1.66
48897--49027	48	2.7	48	88	2	183	16	7	41	34	1.77
48995--49103	30	3.4	31	73	16	80	18	3	48	29	1.65
49031--49116	36	2.4	36	96	0	154	17	4	45	32	1.69
48946--49413	150	3.1	150	86	2	665	20	7	42	29	1.80
49178--49267	36	2.5	36	87	0	117	22	6	42	28	1.79
49322--49413	36	2.6	36	83	0	121	21	7	43	27	1.79
50658--50716	30	2.0	30	93	6	102	18	1	47	32	1.59
50616--50778	78	2.1	79	88	3	238	13	7	45	33	1.73
50691--50869	93	1.9	93	88	0	268	16	8	44	30	1.77
50832--51262	48	8.8	48	72	9	332	18	6	47	27	1.73
50739--51047	147	2.1	141	88	3	465	19	5	47	27	1.71
50880--51241	99	3.7	99	92	2	557	17	6	47	28	1.73
51180--51323	78	1.8	78	86	0	207	25	4	44	25	1.74
51228--51286	30	2.0	30	86	0	82	28	6	38	25	1.81
50898--51313	198	2.1	192	80	8	426	19	6	46	27	1.75
51264--51514	96	2.6	96	85	0	358	22	7	39	30	1.82
51447--51585	48	2.9	48	83	0	161	25	8	46	20	1.79
52075--52126	22	2.2	24	83	6	63	53	1	9	34	1.45
53666--53700	9	4.0	9	96	3	63	31	0	0	68	0.90
62746--62777	16	2.0	16	93	0	55	53	12	0	34	1.39
72770--72844	28	2.7	28	89	4	116	40	21	13	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75900--75931	12	2.7	12	90	0	55	12	18	12	56	1.67
90204--90255	16	3.6	16	75	24	69	28	13	21	36	1.91
90207--90268	27	2.3	27	100	0	124	29	14	22	33	1.94
90392--90430	17	2.4	17	95	4	71	43	0	5	51	1.24
90401--90456	26	2.2	25	78	15	60	41	0	3	55	1.17
105001--105053	17	3.2	16	84	10	70	16	41	24	16	1.89
105041--105071	7	4.4	7	91	0	53	16	25	32	25	1.96
105075--105215	29	5.0	29	83	7	148	34	4	21	39	1.75
105105--105228	29	4.4	28	84	6	126	33	4	20	41	1.74
105968--106000	15	2.2	15	89	10	50	21	18	12	48	1.80
106237--106279	13	3.2	13	86	3	50	39	2	6	51	1.42

Tables:   1

The End!