genome.fa.s1185.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001185.1 Hibiscus syriacus cultivar Beakdansim tig00002352_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70743

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7818--7875	31	1.9	30	82	10	73	44	17	15	22	1.86
9594--9825	64	3.6	64	80	5	231	32	21	18	28	1.97
10757--10878	31	3.9	31	78	9	131	29	19	20	30	1.97
11754--11803	25	2.0	25	96	0	91	42	20	14	24	1.88
12072--12125	20	2.7	20	77	11	74	27	31	14	25	1.95
12113--12180	20	3.3	20	73	4	73	32	23	17	26	1.97
12174--12213	20	2.0	20	85	9	55	42	25	15	17	1.88
12655--12694	20	2.0	20	90	4	64	47	25	17	10	1.78
14845--14940	21	4.6	21	72	10	79	23	34	17	23	1.96
14841--14940	42	2.4	42	78	6	112	24	35	17	24	1.95
16366--16407	14	3.0	14	82	0	57	35	0	14	50	1.43
16321--16456	65	2.2	65	82	7	165	30	1	16	51	1.53
16572--16621	20	2.5	20	93	0	82	16	20	22	42	1.89
17141--17204	24	2.7	24	78	4	76	48	10	4	35	1.59
17149--17185	18	2.1	18	89	0	56	51	10	5	32	1.60
17529--17578	25	2.0	25	92	0	82	46	20	8	26	1.78
17966--18001	18	2.0	18	94	0	63	16	2	25	55	1.55
20257--20310	24	2.2	24	93	0	90	40	20	18	20	1.91
20437--20470	12	2.8	12	86	0	50	17	0	23	58	1.38
21215--21325	20	5.7	20	71	15	97	27	14	26	32	1.95
21215--21343	19	6.6	20	72	13	99	26	15	26	31	1.96
21215--21320	40	2.7	39	78	11	117	27	15	26	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21841--21878	20	2.0	20	89	5	60	52	2	0	44	1.14
23130--23196	2	33.5	2	100	0	134	50	0	0	49	1.00
23196--23236	2	20.5	2	94	0	73	48	0	51	0	1.00
24682--24772	29	3.1	27	66	16	65	36	21	1	40	1.61
27617--27685	27	2.5	28	79	6	79	37	5	1	55	1.33
32785--32810	2	13.0	2	100	0	52	50	0	0	50	1.00
39132--39286	77	2.0	77	96	0	283	49	7	4	38	1.52
41501--41544	21	2.0	22	86	4	63	68	6	13	11	1.39
43845--43883	20	1.9	21	89	5	62	58	7	0	33	1.26
44745--44786	16	2.5	17	78	21	52	59	4	0	35	1.19
53357--53682	173	1.9	171	89	5	505	47	12	11	27	1.76
56901--56948	2	24.0	2	100	0	96	50	0	0	50	1.00
64570--64595	13	2.0	13	100	0	52	53	0	0	46	1.00
65829--65882	24	2.2	24	96	0	99	31	20	9	38	1.84
66524--66562	20	2.0	20	84	0	51	25	17	28	28	1.98
67173--67245	24	3.2	24	71	21	66	30	20	24	24	1.99
67218--67257	21	1.9	21	89	0	62	30	15	25	30	1.95
67600--67658	25	2.3	25	79	2	64	38	10	13	37	1.79
68777--68803	11	2.5	11	100	0	54	48	0	0	51	1.00
69578--69619	21	1.9	23	85	9	61	40	35	9	14	1.78

Tables:   1

The End!