Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001186.1 Hibiscus syriacus cultivar Beakdansim tig00002353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110824

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4607--4658
16
3.6
16
75
24
69
28
13
21
36
1.91
4610--4671
27
2.3
27
97
0
115
29
16
20
33
1.94
4794--4832
17
2.4
17
95
4
71
43
0
5
51
1.24
4803--4858
26
2.2
25
78
15
60
41
0
3
55
1.17
17418--17490
16
4.6
15
73
20
51
28
0
8
63
1.23
19399--19452
18
3.1
18
83
2
65
16
42
22
18
1.89
19480--19618
29
4.8
29
82
7
142
34
5
20
39
1.75
19505--19612
57
1.9
57
86
3
155
31
5
21
41
1.76
20388--20420
15
2.2
15
89
10
50
21
18
12
48
1.80
28824--29214
186
2.1
185
93
1
669
45
7
3
43
1.49
37457--37502
17
2.6
19
76
16
53
23
2
0
73
0.94
37450--37498
10
5.1
10
85
9
50
22
2
0
75
0.90
37464--37502
10
4.0
10
86
6
53
23
2
0
74
0.94
37785--37890
53
2.0
53
98
0
203
30
11
12
46
1.76
50989--51028
17
2.4
17
95
0
71
32
20
5
42
1.73
57802--58541
370
2.0
370
97
0
1381
37
19
22
21
1.94
61705--61743
16
2.4
16
100
0
78
35
25
25
12
1.92
64659--64724
32
2.1
32
89
10
102
33
12
6
48
1.65
64659--64724
30
2.1
30
89
10
98
33
12
6
48
1.65
64800--64840
21
2.0
21
90
0
64
41
2
2
53
1.27
64992--65023
2
16.0
2
100
0
64
50
0
0
50
1.00
66207--66258
24
2.2
24
86
6
70
46
17
11
25
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66220--66318
24
4.1
24
85
5
119
38
19
15
27
1.91
66261--66299
12
3.2
12
79
13
53
35
23
12
28
1.91
66231--66338
48
2.3
48
82
4
130
43
17
12
26
1.84
74306--74332
14
1.9
14
100
0
54
29
0
11
59
1.32
85468--85496
7
4.1
7
100
0
58
13
0
86
0
0.58
85907--85958
2
26.0
2
100
0
104
50
0
0
50
1.00
86801--86853
17
2.9
17
77
8
52
52
3
0
43
1.19
87436--87487
25
2.0
26
82
10
63
44
1
5
48
1.38
91591--91769
60
3.0
60
78
6
166
32
17
3
45
1.67
94879--95147
141
1.9
141
89
1
414
34
19
21
24
1.96
96576--96622
22
2.1
23
88
4
69
38
25
10
25
1.88
98796--99062
53
5.0
53
77
5
263
34
16
24
25
1.95
98895--98982
28
3.1
28
93
0
149
37
21
21
19
1.94
98808--99111
53
5.7
53
76
8
202
32
16
25
25
1.96

Tables:   1

The End!