Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001187.1 Hibiscus syriacus cultivar Beakdansim tig00002355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75003
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:6108 original size:16 final size:16
Alignment explanation
Indices: 6087--6117 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
6077 GCTACTGATG
6087 CCCCTTCCGCCATCCT
1 CCCCTTCCGCCATCCT
6103 CCCCTTCCGCCATCC
1 CCCCTTCCGCCATCC
6118 ACAAATTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.65, G:0.06, T:0.23
Consensus pattern (16 bp):
CCCCTTCCGCCATCCT
Found at i:15043 original size:31 final size:31
Alignment explanation
Indices: 15008--15085 Score: 138
Period size: 31 Copynumber: 2.5 Consensus size: 31
14998 ATAAATTAAA
15008 AGTTTAGGTACTAAATCGGATCAAAACCGAT
1 AGTTTAGGTACTAAATCGGATCAAAACCGAT
*
15039 AGTTTAAGTACTAAATCGGATCAAAACCGAT
1 AGTTTAGGTACTAAATCGGATCAAAACCGAT
*
15070 AGTTTAGATACTAAAT
1 AGTTTAGGTACTAAAT
15086 GCGCAATTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (31 bp):
AGTTTAGGTACTAAATCGGATCAAAACCGAT
Found at i:25045 original size:64 final size:64
Alignment explanation
Indices: 24977--25197 Score: 248
Period size: 64 Copynumber: 3.5 Consensus size: 64
24967 TTGAAGGTGT
* **
24977 ATCGATGCATTAGTAGTGCATCGATGCA-CTCTTTTAA-AATAAAAACATCGAATGCAATTCATG
1 ATCGATGCATAAGTAGTGCATCGATGCATC-CAATTAATAAT-AAAACATCGAATGCAATTCATG
25040 C
64 C
* **
25041 ATCGATGCATAAGTAGTGCATCGATGCATCCAATTAATAATGAAACATCGAATGCAATTGGTGC
1 ATCGATGCATAAGTAGTGCATCGATGCATCCAATTAATAATAAAACATCGAATGCAATTCATGC
* * * ** * * ** *
25105 ATTGATGCATAAGGAGTGCATCGATGCATCCCAGCAATAATAATACATCGAATACCTTTTATGC
1 ATCGATGCATAAGTAGTGCATCGATGCATCCAATTAATAATAAAACATCGAATGCAATTCATGC
* *
25169 ACCGATGCATCAGTAGTGCATCGATGCAT
1 ATCGATGCATAAGTAGTGCATCGATGCAT
25198 ACCTTCATTA
Statistics
Matches: 133, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
64 129 0.97
65 4 0.03
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (64 bp):
ATCGATGCATAAGTAGTGCATCGATGCATCCAATTAATAATAAAACATCGAATGCAATTCATGC
Found at i:25523 original size:12 final size:12
Alignment explanation
Indices: 25505--25540 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
25495 TATGTATGTT
25505 CATGTGATATGA
1 CATGTGATATGA
*
25517 TATGTGATATGA
1 CATGTGATATGA
25529 CATGTGATATGA
1 CATGTGATATGA
25541 GAACATGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (12 bp):
CATGTGATATGA
Found at i:25562 original size:23 final size:26
Alignment explanation
Indices: 25505--25573 Score: 85
Period size: 24 Copynumber: 2.8 Consensus size: 26
25495 TATGTATGTT
**
25505 CATGTGATAT--GATATGTGATATGA
1 CATGTGATATGAGATACATGATATGA
25529 CATGTGATATGAGA-ACATGATATGA
1 CATGTGATATGAGATACATGATATGA
25554 -A-GTGATATGAGATACATGAT
1 CATGTGATATGAGATACATGAT
25574 CAATAGAGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.28
24 18 0.45
25 9 0.22
26 2 0.05
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.32
Consensus pattern (26 bp):
CATGTGATATGAGATACATGATATGA
Found at i:25702 original size:15 final size:15
Alignment explanation
Indices: 25684--25713 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
25674 CGAAGGTATA
25684 ATAGTCCTTCGGGAT
1 ATAGTCCTTCGGGAT
25699 ATAGTCCTTCGGGAT
1 ATAGTCCTTCGGGAT
25714 GTAGGGGTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (15 bp):
ATAGTCCTTCGGGAT
Found at i:31840 original size:64 final size:64
Alignment explanation
Indices: 31762--31978 Score: 213
Period size: 64 Copynumber: 3.4 Consensus size: 64
31752 AGGTGTATCG
* * ** *
31762 ATGCATTAGTAGTGCATTGATGCA-CTCTTTTAA-AATAAAAACATCGAATGCAATTCATTCATC
1 ATGCATAAGTAGTGCATCGATGCATC-CCATTAATAAT-AAAACATCGAATGCAATTCATGCATC
31825 A
64 A
* ** *
31826 ATGCATAAGTAGTGCATCGATGCATCCCATTAATAATGAAACATCGAATGCAATTGGTGCATCG
1 ATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGCATCA
* ** * * ** * * *
31890 ATGCATAAGGAGTGCATCGATGCATCCCAGCAATAATAATACATCGAATACCTTTTATGCACCG
1 ATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGCATCA
* *
31954 ATGCATCAGTAGTGCATCAATGCAT
1 ATGCATAAGTAGTGCATCGATGCAT
31979 ACCTTCATTA
Statistics
Matches: 128, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
64 124 0.97
65 4 0.03
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (64 bp):
ATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGCATCA
Found at i:32304 original size:12 final size:11
Alignment explanation
Indices: 32287--32344 Score: 64
Period size: 12 Copynumber: 5.0 Consensus size: 11
32277 ATATATGTTC
32287 ATGTGATATGA
1 ATGTGATATGA
32298 TATGTGATATGA
1 -ATGTGATATGA
32310 CATGTGATATGAGA
1 -ATGTGATAT--GA
*
32324 ATATGATATGA
1 ATGTGATATGA
32335 A-GTGATATGA
1 ATGTGATATGA
32345 GATACATGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
10 8 0.20
11 3 0.07
12 20 0.49
13 8 0.20
14 2 0.05
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.34
Consensus pattern (11 bp):
ATGTGATATGA
Found at i:32484 original size:15 final size:15
Alignment explanation
Indices: 32466--32498 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
32456 GAGGGTATAA
32466 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
32481 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
32496 TAG
1 TAG
32499 GGGTCCTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.18, G:0.33, T:0.33
Consensus pattern (15 bp):
TAGTCCTTCGGGATG
Found at i:33193 original size:31 final size:31
Alignment explanation
Indices: 33152--33211 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
33142 AGTTAAGGGT
33152 GTTACAAATGTTATCGATTTGTAACAAATTA
1 GTTACAAATGTTATCGATTTGTAACAAATTA
* * *
33183 GTTACTAATGTTGTTGATTTGTAACAAAT
1 GTTACAAATGTTATCGATTTGTAACAAAT
33212 CGATCACTCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (31 bp):
GTTACAAATGTTATCGATTTGTAACAAATTA
Found at i:37893 original size:14 final size:15
Alignment explanation
Indices: 37865--37898 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
37855 AATTCAATGT
37865 CTTTTAAATGTCAAA
1 CTTTTAAATGTCAAA
37880 CTTTTAAA-GTCAAA
1 CTTTTAAATGTCAAA
*
37894 ATTTT
1 CTTTT
37899 GTTTGGAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (15 bp):
CTTTTAAATGTCAAA
Found at i:48322 original size:13 final size:13
Alignment explanation
Indices: 48304--48328 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48294 ATTACAGATA
48304 TGCATATGAAGAC
1 TGCATATGAAGAC
48317 TGCATATGAAGA
1 TGCATATGAAGA
48329 TTGTTCAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (13 bp):
TGCATATGAAGAC
Found at i:52330 original size:37 final size:37
Alignment explanation
Indices: 52289--52359 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
52279 AACATAACGT
*
52289 TAGAGTTTTACTAGGATTCAAACTCCTTAAAATAAGA
1 TAGAGTTTTACTAGGATTCAAACTCCTAAAAATAAGA
* *
52326 TAGAGTTTTACTATGATTCAAGCTCCTAAAAATA
1 TAGAGTTTTACTAGGATTCAAACTCCTAAAAATA
52360 GAATCCACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (37 bp):
TAGAGTTTTACTAGGATTCAAACTCCTAAAAATAAGA
Found at i:53003 original size:26 final size:28
Alignment explanation
Indices: 52953--53005 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
52943 TTTGTTGCAA
52953 ATATTATATTTATTATTACATATATACAT
1 ATATTATATTTATTATTACA-ATATACAT
*
52982 ATATTTTATTTATTATT-C-ATATAC
1 ATATTATATTTATTATTACAATATAC
53006 CCTTCTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 6 0.26
28 1 0.04
29 16 0.70
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.55
Consensus pattern (28 bp):
ATATTATATTTATTATTACAATATACAT
Found at i:53190 original size:19 final size:19
Alignment explanation
Indices: 53140--53191 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
53130 ATTTTTATTC
*
53140 CTTATTTTTATTTTTTTAT
1 CTTATTTATATTTTTTTAT
* *
53159 CTTCTTTACATTTGTTTTAT
1 CTTATTTATATTT-TTTTAT
*
53179 -TTATTTGTATTTT
1 CTTATTTATATTTT
53192 CTTCTTTTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
18 1 0.04
19 19 0.73
20 6 0.23
ACGTcount: A:0.15, C:0.08, G:0.04, T:0.73
Consensus pattern (19 bp):
CTTATTTATATTTTTTTAT
Found at i:53314 original size:26 final size:25
Alignment explanation
Indices: 53284--53342 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
53274 GTATTCATTT
*
53284 TTTATCTTTACTCCTTTTTTTATTCC
1 TTTAT-TTCACTCCTTTTTTTATTCC
* * *
53310 TTTATTTCAGTCGTTTTTTTATTTTC
1 TTTATTTCACTCCTTTTTTTA-TTCC
53336 TTTATTT
1 TTTATTT
53343 TTATTTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.12, C:0.15, G:0.03, T:0.69
Consensus pattern (25 bp):
TTTATTTCACTCCTTTTTTTATTCC
Found at i:53353 original size:14 final size:15
Alignment explanation
Indices: 53325--53354 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
53315 TTCAGTCGTT
53325 TTTTTATTTTCTTTA
1 TTTTTATTTTCTTTA
53340 TTTTTATTTT-TTTA
1 TTTTTATTTTCTTTA
53354 T
1 T
53355 CTAACACGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTATTTTCTTTA
Found at i:55878 original size:418 final size:418
Alignment explanation
Indices: 54973--56231 Score: 2295
Period size: 418 Copynumber: 3.0 Consensus size: 418
54963 GTCTATACCT
54973 TTAAAATGTTTTTTGTCTCTTAAGACGTAACACTTTTGGCCCCAATAAGGATTATTTACAATAAC
1 TTAAAATG-TTTTTGTCTCTTAAGACGTAACACTTTTGGCCCCAATAAGGATTATTTACAATAAC
* *
55038 AGACATATTTTTTGGATCAATGCCTCGAATATTTCATGCATCATGCATTCTTGCATATTTCACAT
65 ATACATATTTTTTGGATCAATGCCTCGAACATTTCATGCATCATGCATTCTTGCATATTTCACAT
*
55103 AATTTCTCTTTTTCATTGCATCCACACGAACTAACAAAAGATTTTCATGAACAAAGGGGTACAAA
130 AATTTCTCTTTTTCATTGCATCAACACGAACTAACAAAAGATTTTCATGAACAAAGGGGTACAAA
* * * * *
55168 CACTGGATGT-CCTCCACAAGCTTCGGAAATTTGTCATCCTCACAACACTTACCCAAAGGAAGAT
195 CACTGGACGTACCTCTACAAGCTTCGGACATGTGTCATCCTCACAACACTTACGCAAAGGAAGAT
* *
55232 GGAAGCAAGATTTTAACAATTAAAAGAAAAATTGAAATCAGTACAGTGGGAGCCTGATCAGTTAA
260 GGAAGCAAGATTTTAACAATTAAAAGAAAAATTGAAATCAGTACA---GGATCCTGATCAGTTGA
* *
55297 TAGATTCAGGGGCATGGACAATCGAAGAATGGGGCATTGCATCTACTATTTACATTGAGAGTATT
322 TAGATTCAGGGGCATGGGCAATCGAATAATGGGGCATTGCATCTACTATTTACATTGAGAGTATT
55362 GTCTTGTGTGAACACGTTTTTAATCTTTCATG
387 GTCTTGTGTGAACACGTTTTTAATCTTTCATG
55394 TTAAAATGTTTTTGTCTCTTAAGACGTAACACTTTTGGCCCCAATAAGGATTATTTACAATAACA
1 TTAAAATGTTTTTGTCTCTTAAGACGTAACACTTTTGGCCCCAATAAGGATTATTTACAATAACA
55459 TACATATTTTTTGGATCAATGCCTCGAACATTTCATGCATCATGCATTCTTGCATATTTCACATA
66 TACATATTTTTTGGATCAATGCCTCGAACATTTCATGCATCATGCATTCTTGCATATTTCACATA
*
55524 ATTTCTCTTTTTCATTGCATCAACACGAACTAACAAAATATTTTCATGAACAAAGGGGTACAAAC
131 ATTTCTCTTTTTCATTGCATCAACACGAACTAACAAAAGATTTTCATGAACAAAGGGGTACAAAC
55589 ACTGGACGTACCTCTACAAGCTTCGGACATGTGTCATCCTCACAACACTTACGCAAAGGAAGATG
196 ACTGGACGTACCTCTACAAGCTTCGGACATGTGTCATCCTCACAACACTTACGCAAAGGAAGATG
*
55654 GAAGCAAGATTTTAACAATTAAAAGAAAAATTGAAATCAGTACAAGATCCTGATCAGTTGATAGA
261 GAAGCAAGATTTTAACAATTAAAAGAAAAATTGAAATCAGTACAGGATCCTGATCAGTTGATAGA
55719 TTCAGGGGCATGGGCAATCGAATAATGGGGCATTGCATCTACTATTTACATTGAGAGTATTGTCT
326 TTCAGGGGCATGGGCAATCGAATAATGGGGCATTGCATCTACTATTTACATTGAGAGTATTGTCT
55784 TGTGTGAACACGTTTTTAATCTTTCATG
391 TGTGTGAACACGTTTTTAATCTTTCATG
*
55812 TTAAAATGTTGTTGTCTCTTAAGACGTAACACTTTTGGCCCCAATAAGGATTATTTACAATAACA
1 TTAAAATGTTTTTGTCTCTTAAGACGTAACACTTTTGGCCCCAATAAGGATTATTTACAATAACA
55877 TACATATTTTTTGGATCAATGCCTCGAACATTTCATGCATCATGCATTCTTGCATATTTCACATA
66 TACATATTTTTTGGATCAATGCCTCGAACATTTCATGCATCATGCATTCTTGCATATTTCACATA
55942 ATTTCTCTTTTTCATTGCATCAACACGAACTAACAAAAGATTTTCATGAACAAAGGGGTACAAAC
131 ATTTCTCTTTTTCATTGCATCAACACGAACTAACAAAAGATTTTCATGAACAAAGGGGTACAAAC
56007 ACTGGACGTACCTCTACAAGCTTCGGACATGTGTCATCCTCACAACACTTACGCAAAGGAAGATG
196 ACTGGACGTACCTCTACAAGCTTCGGACATGTGTCATCCTCACAACACTTACGCAAAGGAAGATG
*
56072 GAAGCAAGATTTTAACAATTAAAAGAAAAATTGAAATCAGTACAGGATCCTGATCATTTGATAGA
261 GAAGCAAGATTTTAACAATTAAAAGAAAAATTGAAATCAGTACAGGATCCTGATCAGTTGATAGA
* * *
56137 TTCAGGGGCATGAGCAATCGAATAATGGGGCATTGCATCTACCATTTACATTGAGAGCATTGTCT
326 TTCAGGGGCATGGGCAATCGAATAATGGGGCATTGCATCTACTATTTACATTGAGAGTATTGTCT
*
56202 TGTGTGTACACGTTTTTAATCTTTCATG
391 TGTGTGAACACGTTTTTAATCTTTCATG
56230 TT
1 TT
56232 TGCTTAATCT
Statistics
Matches: 815, Mismatches: 22, Indels: 5
0.97 0.03 0.01
Matches are distributed among these distances:
418 521 0.64
420 191 0.23
421 103 0.13
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32
Consensus pattern (418 bp):
TTAAAATGTTTTTGTCTCTTAAGACGTAACACTTTTGGCCCCAATAAGGATTATTTACAATAACA
TACATATTTTTTGGATCAATGCCTCGAACATTTCATGCATCATGCATTCTTGCATATTTCACATA
ATTTCTCTTTTTCATTGCATCAACACGAACTAACAAAAGATTTTCATGAACAAAGGGGTACAAAC
ACTGGACGTACCTCTACAAGCTTCGGACATGTGTCATCCTCACAACACTTACGCAAAGGAAGATG
GAAGCAAGATTTTAACAATTAAAAGAAAAATTGAAATCAGTACAGGATCCTGATCAGTTGATAGA
TTCAGGGGCATGGGCAATCGAATAATGGGGCATTGCATCTACTATTTACATTGAGAGTATTGTCT
TGTGTGAACACGTTTTTAATCTTTCATG
Found at i:57065 original size:12 final size:10
Alignment explanation
Indices: 57020--57090 Score: 54
Period size: 10 Copynumber: 6.7 Consensus size: 10
57010 CGAAGATAAT
*
57020 AAGAACAAAA
1 AAGAAAAAAA
57030 AAGAAAAAAA
1 AAGAAAAAAA
*
57040 GAGAAAAAATA
1 AAGAAAAAA-A
57051 AAGAAAAAAGCA
1 AAGAAAAAA--A
57063 AAGAGAAAATAA
1 AAGA-AAAA-AA
*
57075 AA-AATAAAA
1 AAGAAAAAAA
*
57084 AACAAAA
1 AAGAAAA
57091 CAGTGAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
9 4 0.08
10 23 0.46
11 10 0.20
12 8 0.16
13 4 0.08
14 1 0.02
ACGTcount: A:0.80, C:0.04, G:0.11, T:0.04
Consensus pattern (10 bp):
AAGAAAAAAA
Found at i:57068 original size:25 final size:25
Alignment explanation
Indices: 57026--57089 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
57016 TAATAAGAAC
57026 AAAAAAG--AAAA-AAAGAGAAAA-
1 AAAAAAGAAAAAACAAAGAGAAAAT
*
57047 AATAAAGAAAAAAGCAAAGAGAAAAT
1 AAAAAAGAAAAAA-CAAAGAGAAAAT
*
57073 AAAAAATAAAAAACAAA
1 AAAAAAGAAAAAACAAA
57090 ACAGTGAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
21 6 0.17
23 4 0.11
25 14 0.40
26 11 0.31
ACGTcount: A:0.81, C:0.03, G:0.11, T:0.05
Consensus pattern (25 bp):
AAAAAAGAAAAAACAAAGAGAAAAT
Found at i:57071 original size:23 final size:21
Alignment explanation
Indices: 57020--57090 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
57010 CGAAGATAAT
*
57020 AAGAACAAA-AAAGAAAAAAA
1 AAGAAAAAATAAAGAAAAAAA
*
57040 GAGAAAAAATAAAGAAAAAAGCA
1 AAGAAAAAATAAAGAAAAAA--A
*
57063 AAGAGAAAATAAA-AAATAAAA
1 AAGAAAAAATAAAGAAA-AAAA
*
57084 AACAAAA
1 AAGAAAA
57091 CAGTGAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
20 7 0.17
21 16 0.39
22 3 0.07
23 15 0.37
ACGTcount: A:0.80, C:0.04, G:0.11, T:0.04
Consensus pattern (21 bp):
AAGAAAAAATAAAGAAAAAAA
Found at i:58800 original size:36 final size:36
Alignment explanation
Indices: 58748--58863 Score: 187
Period size: 36 Copynumber: 3.2 Consensus size: 36
58738 AATTTACTCA
58748 AAACAAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
1 AAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
* *
58785 AAACAAATTTTGTCTCTCTTTAGACAGTTTCCATTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
* *
58821 AAACAAATTTTGTTTCTCTTGAGAGAGTTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
58857 AAACAAA
1 AAACAAA
58864 ATCTTTAAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
36 69 0.95
37 4 0.05
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (36 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
Found at i:58850 original size:72 final size:71
Alignment explanation
Indices: 58748--59037 Score: 290
Period size: 72 Copynumber: 4.1 Consensus size: 71
58738 AATTTACTCA
* *
58748 AAACAAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTTAGACAGT
1 AAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATAGT
58813 TTCCATTG
65 TTCC-TTG
* * * *
58821 AAACAAATTTTGTTTCTCTTGAGAGAGTTTCCCTTGAAACAAA------ATCT-TT-AAATATGT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATA-G-
58878 TTTCCTTG
64 TTTCCTTG
* * ** *** ** * *
58886 AAATAAATTTTGTCTCCCACGAGACAAAATCTTTTGGAACTAAGTTTTGTCTCTCTTGAGATAGT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAATTTTGTCTCTCTTGAGATAGT
58951 TTCTCTTG
65 TTC-CTTG
* *
58959 AAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATTGTT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATAGTT
59024 TCCCTTG
66 T-CCTTG
59031 AAACAAA
1 AAACAAA
59038 ATCTTTGAAT
Statistics
Matches: 171, Mismatches: 33, Indels: 27
0.74 0.14 0.12
Matches are distributed among these distances:
64 3 0.02
65 34 0.20
66 10 0.06
72 79 0.46
73 41 0.24
74 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.40
Consensus pattern (71 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATAGTT
TCCTTG
Found at i:58977 original size:21 final size:20
Alignment explanation
Indices: 58952--59016 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 20
58942 TGAGATAGTT
58952 TCTCTTGAAACAAATTTTATC
1 TCTCTTGAAACAAATTTT-TC
* *
58973 TCTCTTGAGAC--A-GTTTC
1 TCTCTTGAAACAAATTTTTC
58990 -C-CTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTT-TC
59009 TCTCTTGA
1 TCTCTTGA
59017 GATTGTTTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
15 7 0.21
16 1 0.03
17 3 0.09
18 4 0.12
19 3 0.09
20 1 0.03
21 15 0.44
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.42
Consensus pattern (20 bp):
TCTCTTGAAACAAATTTTTC
Found at i:58982 original size:36 final size:36
Alignment explanation
Indices: 58930--59037 Score: 171
Period size: 36 Copynumber: 3.0 Consensus size: 36
58920 TGGAACTAAG
* *
58930 TTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
*
58966 TTTTATCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
**
59002 TTTTGTCTCTCTTGAGATTGTTTCCCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
59038 ATCTTTGAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 66 1.00
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.43
Consensus pattern (36 bp):
TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
Found at i:59051 original size:174 final size:174
Alignment explanation
Indices: 58756--59209 Score: 730
Period size: 174 Copynumber: 2.6 Consensus size: 174
58746 CAAAACAAAA
* * *
58756 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTTAGACAGTTTCCATTG
1 TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
* *
58821 AAACAAATTTTGTTTCTCTTGAGAGAGTTTCCCTTGAAACAAAATCTTTAAATATGTTTTCCTTG
66 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTAAATATGTTTTCCTTG
* *
58886 AAATAAATTTTGTCTCCCACGAGACAAAATCTTTTGGAACTAAG
131 AAACAAATTTCGTCTCCCACGAGACAAAATCTTTTGGAACTAAG
* *
58930 TTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTG
1 TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
** *
58995 AAACAAATTTTGTCTCTCTTGAGATTGTTTCCCTTGAAACAAAATCTTTGAATATGTTTTCCTTG
66 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTAAATATGTTTTCCTTG
** ***
59060 AAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAG
131 AAACAAATTTCGTCTCCCACGAGACAAAATCTTTTGGAACTAAG
59104 TTTTGTCTCTCTTGAGACA-TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
1 TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
*
59168 AAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACA
66 AAACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
59210 CAAAAAAACC
Statistics
Matches: 258, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
173 51 0.20
174 207 0.80
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (174 bp):
TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTAAATATGTTTTCCTTG
AAACAAATTTCGTCTCCCACGAGACAAAATCTTTTGGAACTAAG
Found at i:59132 original size:101 final size:102
Alignment explanation
Indices: 58950--59138 Score: 265
Period size: 101 Copynumber: 1.9 Consensus size: 102
58940 CTTGAGATAG
* *
58950 TTTCTCTTGAAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTT
1 TTTCTCTTGAAACAAATTTCATCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTT
**
59015 GAGATTGTTTCCCTTGAAACAAAATCTTTGAATATGT
66 GAGATCATTTCCCTTGAAACAAAATCTTTGAATATGT
* ** * *
59052 TTTC-CTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCTCTTGAAACAAATTTCATCTCCCTTGAGACAGTTTCCCTTGAAAC-AAATTTTGTCTCTCT
*
59116 TGAGA-CATTTCTCTTGAAACAAA
65 TGAGATCATTTCCCTTGAAACAAA
59139 TTTTGTCTCT
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
101 53 0.70
102 23 0.30
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (102 bp):
TTTCTCTTGAAACAAATTTCATCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTT
GAGATCATTTCCCTTGAAACAAAATCTTTGAATATGT
Found at i:59149 original size:35 final size:36
Alignment explanation
Indices: 59052--59209 Score: 230
Period size: 37 Copynumber: 4.4 Consensus size: 36
59042 TTGAATATGT
* *
59052 TTTC-CTTGAAACAAATTTCGTCTCCCTTGAGACAG
1 TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
* * *
59087 TTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACA-
1 TTTCTCTTGAAAC-AAATTTTGTCTCTCTTGAGACAG
59123 TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
1 TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
*
59159 TTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAG
1 TTTCTCTTGAAACAAA-TTTTGTCTCTCTTGAGACAG
59196 TTTCTCTTGAAACA
1 TTTCTCTTGAAACA
59210 CAAAAAAACC
Statistics
Matches: 109, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
35 25 0.23
36 32 0.29
37 52 0.48
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.41
Consensus pattern (36 bp):
TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
Found at i:59177 original size:72 final size:73
Alignment explanation
Indices: 59052--59209 Score: 248
Period size: 72 Copynumber: 2.2 Consensus size: 73
59042 TTGAATATGT
** * *
59052 TTTC-CTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCTCTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCT
59116 TGAGACA-
66 TGAGACAG
* *
59123 TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCT
1 TTTCTCTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCT
59188 TGAGACAG
66 TGAGACAG
59196 TTTCTCTTGAAACA
1 TTTCTCTTGAAACA
59210 CAAAAAAACC
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
71 4 0.05
72 61 0.77
73 14 0.18
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.41
Consensus pattern (73 bp):
TTTCTCTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCT
TGAGACAG
Found at i:59242 original size:34 final size:35
Alignment explanation
Indices: 59200--59276 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 35
59190 AGACAGTTTC
59200 TCTTGAAACAC-AAAAAAACCTTTGAAATCATTTA
1 TCTTGAAACACAAAAAAAACCTTTGAAATCATTTA
** *
59234 TCTTGAAACACAAAAAAAACCTTTGAAATTGTTTC
1 TCTTGAAACACAAAAAAAACCTTTGAAATCATTTA
59269 TCTTGAAA
1 TCTTGAAA
59277 AAAAACTGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 11 0.28
35 28 0.72
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (35 bp):
TCTTGAAACACAAAAAAAACCTTTGAAATCATTTA
Found at i:60142 original size:37 final size:37
Alignment explanation
Indices: 60101--60171 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
60091 AACATAACGT
** *
60101 TAGAGTTTTGTTATGATTCAAACTCCTACAAATAAGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAAGA
*
60138 TAGAGTTTTACTATGATTCAAGCTCCTAAAAATA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATA
60172 GGATCCACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (37 bp):
TAGAGTTTTACTATGATTCAAACTCCTAAAAATAAGA
Found at i:60693 original size:20 final size:20
Alignment explanation
Indices: 60631--60695 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
60621 ATGAATATTC
*
60631 ATTA-TATTTTTTTATCT-T
1 ATTATTATTTTTTTCTCTCT
*
60649 ATT-TTATTTCATTTTC-CTACC
1 ATTATTATTT--TTTTCTCT-CT
60670 ATTATTATTTTTTTCTCTCT
1 ATTATTATTTTTTTCTCTCT
60690 ATTATT
1 ATTATT
60696 TTTCTATACG
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
18 8 0.22
19 2 0.05
20 16 0.43
21 5 0.14
22 6 0.16
ACGTcount: A:0.20, C:0.14, G:0.00, T:0.66
Consensus pattern (20 bp):
ATTATTATTTTTTTCTCTCT
Found at i:60869 original size:3 final size:3
Alignment explanation
Indices: 60823--60886 Score: 51
Period size: 3 Copynumber: 21.3 Consensus size: 3
60813 TATACCCTTC
* * * *
60823 TAT TTT TAT T-T TAT T-T TAT TACT TTT TACT TAT TGT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TA-T TAT TAT TAT TAT TAT
*
60868 TAT TAG TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
60887 CTATTTTATT
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
2 4 0.08
3 39 0.81
4 5 0.10
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:61120 original size:26 final size:26
Alignment explanation
Indices: 61091--61148 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
61081 CATATTCATT
*
61091 TTTATCTTCACTCCTTTTTTTA-TTTC
1 TTTAT-TTCACTCCATTTTTTATTTTC
* *
61117 TTTATTTCAGTCGATTTTTTATTTTC
1 TTTATTTCACTCCATTTTTTATTTTC
61143 TTTATT
1 TTTATT
61149 CTATTTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.14, C:0.16, G:0.03, T:0.67
Consensus pattern (26 bp):
TTTATTTCACTCCATTTTTTATTTTC
Found at i:61926 original size:15 final size:17
Alignment explanation
Indices: 61906--61941 Score: 58
Period size: 15 Copynumber: 2.2 Consensus size: 17
61896 ACATAGTGGA
61906 ATTTGATTT-AATTT-G
1 ATTTGATTTGAATTTAG
61921 ATTTGATTTGAATTTAG
1 ATTTGATTTGAATTTAG
61938 ATTT
1 ATTT
61942 AAATTAGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.47
16 5 0.26
17 5 0.26
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (17 bp):
ATTTGATTTGAATTTAG
Found at i:65024 original size:11 final size:11
Alignment explanation
Indices: 65010--65035 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
65000 AATATTTTCC
65010 TAAAAATAATT
1 TAAAAATAATT
65021 TAAAAATAATT
1 TAAAAATAATT
65032 TAAA
1 TAAA
65036 TTAAGATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TAAAAATAATT
Found at i:65206 original size:2 final size:2
Alignment explanation
Indices: 65199--65250 Score: 90
Period size: 2 Copynumber: 27.0 Consensus size: 2
65189 AATGAAGTAA
65199 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65241 A- AT A- AT AT AT
1 AT AT AT AT AT AT
65251 TTATTTTTAA
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 46 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:66938 original size:18 final size:19
Alignment explanation
Indices: 66908--66943 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
66898 ATGGTATAAT
*
66908 TTAAGCACTTATTTTTATA
1 TTAAGCACTTATTATTATA
66927 TTAAGC-CTTATTATTAT
1 TTAAGCACTTATTATTAT
66944 TAGGGTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.53
Consensus pattern (19 bp):
TTAAGCACTTATTATTATA
Found at i:72124 original size:22 final size:20
Alignment explanation
Indices: 72099--72146 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
72089 TGGTTTAGGG
72099 TTAGGTTTATTT-TTATAATGGT
1 TTAGGTTT-TTTGTT-TAA-GGT
72121 TTAGGGTTTTTTGTTTAAGGT
1 TTA-GGTTTTTTGTTTAAGGT
72142 TTAGG
1 TTAGG
72147 GTTAGATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
20 2 0.08
21 6 0.25
22 9 0.38
23 7 0.29
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.56
Consensus pattern (20 bp):
TTAGGTTTTTTGTTTAAGGT
Found at i:72132 original size:21 final size:22
Alignment explanation
Indices: 72099--72150 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
72089 TGGTTTAGGG
*
72099 TTAGGTTTATTTT-TATAATGGT
1 TTAGGGTTATTTTGTATAA-GGT
*
72121 TTAGGGTT-TTTTGTTTAAGGT
1 TTAGGGTTATTTTGTATAAGGT
72142 TTAGGGTTA
1 TTAGGGTTA
72151 GATTAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.56
Consensus pattern (22 bp):
TTAGGGTTATTTTGTATAAGGT
Found at i:72196 original size:3 final size:3
Alignment explanation
Indices: 72188--72230 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
72178 TAAAATGAAT
* * *
72188 ATA ATA ATA GTA ATC ATA ATC ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
72231 AGGAACATCT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:73562 original size:217 final size:217
Alignment explanation
Indices: 73186--73622 Score: 847
Period size: 217 Copynumber: 2.0 Consensus size: 217
73176 TTTCTGTCGC
73186 AGAAAAGGAAAAAAAGATATTTTTATAAAAGTACAGCTGACAAGGCACGTGTCTAATGGTTATAA
1 AGAAAAGGAAAAAAAGATATTTTTATAAAAGTACAGCTGACAAGGCACGTGTCTAATGGTTATAA
73251 TTTCCTGGTGGGGACCACTACCACCTGGGAAGATAAGACTCATTCCCAAGGAGTGATTCTAGGGT
66 TTTCCTGGTGGGGACCACTACCACCTGGGAAGATAAGACTCATTCCCAAGGAGTGATTCTAGGGT
73316 TATGATGTGTAATTGGAGTATTAAAGCCCAATATTACCCTTGGAAATTATTTTTTTATATATACC
131 TATGATGTGTAATTGGAGTATTAAAGCCCAATATTACCCTTGGAAATTATTTTTTTATATATACC
73381 TTATACGAGAGAGAAGAGAGGG
196 TTATACGAGAGAGAAGAGAGGG
73403 AGAAAAGGAAAAAAAGATATTTTTATAAAAGTACAGCTGACAAGGCACGTGTCTAATGGTTATAA
1 AGAAAAGGAAAAAAAGATATTTTTATAAAAGTACAGCTGACAAGGCACGTGTCTAATGGTTATAA
* *
73468 TTTCCTGGTGGGGACCACTACCACTTGGGAGGATAAGACTCATTCCCAAGGAGTGATTCTAGGGT
66 TTTCCTGGTGGGGACCACTACCACCTGGGAAGATAAGACTCATTCCCAAGGAGTGATTCTAGGGT
*
73533 TATGATGTGTAATTGGAGTATTGAAGCCCAATATTACCCTTGGAAATTATTTTTTTATATATACC
131 TATGATGTGTAATTGGAGTATTAAAGCCCAATATTACCCTTGGAAATTATTTTTTTATATATACC
73598 TTATACGAGAGAGAAGAGAGGG
196 TTATACGAGAGAGAAGAGAGGG
73620 AGA
1 AGA
73623 GACGCATTGA
Statistics
Matches: 217, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
217 217 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (217 bp):
AGAAAAGGAAAAAAAGATATTTTTATAAAAGTACAGCTGACAAGGCACGTGTCTAATGGTTATAA
TTTCCTGGTGGGGACCACTACCACCTGGGAAGATAAGACTCATTCCCAAGGAGTGATTCTAGGGT
TATGATGTGTAATTGGAGTATTAAAGCCCAATATTACCCTTGGAAATTATTTTTTTATATATACC
TTATACGAGAGAGAAGAGAGGG
Done.