genome.fa.s1189.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001189.1 Hibiscus syriacus cultivar Beakdansim tig00002360_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166740

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276--310	18	1.9	18	100	0	70	14	22	34	28	1.93
274--312	9	4.3	9	83	0	51	15	28	30	25	1.96
2131--2286	77	2.0	78	97	1	296	32	20	21	25	1.98
10292--10399	56	1.9	56	84	5	146	29	23	20	26	1.99
11750--11812	19	3.5	17	80	12	56	50	6	12	30	1.65
11768--11811	19	2.5	18	89	10	65	50	6	13	29	1.68
13047--13115	30	2.2	30	85	15	95	34	5	17	42	1.73
13056--13115	30	2.0	30	93	6	104	33	6	16	43	1.74
13195--13251	21	2.7	21	91	0	96	21	36	19	22	1.95
13236--13294	22	2.8	20	78	12	66	25	28	18	27	1.98
13314--13381	20	3.3	20	85	4	100	17	27	25	29	1.97
13314--13396	41	2.0	41	88	4	123	20	27	25	26	1.99
13744--13813	34	2.1	32	81	5	77	32	14	28	24	1.94
15009--15046	18	2.1	19	85	14	53	52	13	2	31	1.54
16734--16758	2	12.5	2	100	0	50	48	0	0	52	1.00
17206--17410	65	3.2	64	79	11	204	30	23	19	26	1.98
17254--17433	65	2.8	63	81	9	168	28	23	19	27	1.98
20845--20920	29	2.6	30	72	14	77	38	7	0	53	1.30
20947--21010	31	2.1	31	84	0	83	51	0	4	43	1.22
21064--21158	31	3.1	31	83	10	99	66	4	3	26	1.25
21068--21162	29	3.2	30	85	7	122	66	4	2	27	1.21
30249--30305	29	2.0	29	92	0	96	40	26	19	14	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30926--30969	22	2.0	22	95	0	79	20	0	25	54	1.45
30958--30982	7	3.6	7	100	0	50	12	0	40	48	1.40
30927--30976	22	2.3	22	89	0	73	20	0	28	52	1.47
31106--31191	35	2.5	35	79	12	97	40	1	11	46	1.48
31189--31220	7	4.6	7	100	0	64	12	0	40	46	1.42
31242--31356	7	16.6	7	70	1	52	48	26	0	25	1.51
31249--31356	14	7.8	14	75	5	67	49	25	0	25	1.51
31269--31343	28	2.7	28	85	0	96	50	22	0	26	1.49
31297--31366	21	3.3	21	75	13	63	51	21	0	27	1.48
31383--31477	7	13.7	7	74	2	57	25	1	29	44	1.61
31421--31468	20	2.3	20	85	3	60	27	0	27	45	1.54
31499--31571	35	2.1	35	84	0	92	53	24	0	21	1.46
31533--31620	21	4.1	21	79	2	59	52	22	0	25	1.48
31512--31595	14	6.0	14	70	13	57	52	22	0	25	1.47
31506--31614	28	4.1	28	84	9	115	53	23	0	22	1.46
31640--31706	34	2.0	34	86	13	95	41	14	1	41	1.55
31885--31988	37	2.8	37	78	9	106	49	8	0	41	1.40
32127--32173	2	23.5	2	100	0	94	51	0	0	48	1.00
32529--32588	29	2.1	29	96	0	111	13	21	28	36	1.91
35165--35193	14	2.0	15	93	6	51	68	0	0	31	0.89
37241--37297	17	3.1	18	80	12	62	68	1	0	29	1.00
37241--37298	9	6.1	10	71	16	52	68	1	0	29	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37243--37298	14	4.4	13	72	18	55	69	1	0	28	0.98
37262--37323	23	2.8	22	81	11	72	74	4	1	19	1.09
37254--37323	24	3.0	24	82	14	85	74	4	1	20	1.07
37241--37305	23	2.8	24	81	9	80	69	3	0	27	1.03
38252--38285	17	2.1	17	94	5	61	0	17	0	82	0.67
38264--38296	13	2.6	13	90	4	50	0	15	0	84	0.61
43057--43094	17	2.2	17	86	9	51	65	2	2	28	1.19
43672--43700	14	2.0	15	93	6	51	68	0	0	31	0.89
43903--43934	2	16.0	2	100	0	64	50	0	0	50	1.00
45757--45807	3	18.3	3	80	15	56	66	1	0	31	1.03
45757--45812	19	3.1	17	82	12	67	67	1	0	30	1.01
45774--45839	22	3.0	22	85	10	82	72	3	1	22	1.06
48892--48975	3	28.0	3	85	0	105	39	2	0	58	1.11
49400--49432	16	2.1	16	88	11	50	54	15	30	0	1.41
62102--62147	16	2.6	18	87	12	69	32	8	4	54	1.51
62102--62147	19	2.6	17	90	10	67	32	8	4	54	1.51
62908--63134	82	2.7	83	95	0	402	25	13	23	37	1.91
63886--64985	113	9.6	113	88	3	1512	38	13	19	28	1.90
65243--65323	3	27.0	3	84	0	99	39	2	0	58	1.12
65271--65345	9	8.2	9	83	5	53	45	1	0	53	1.08
65745--65777	16	2.1	16	88	11	50	54	15	30	0	1.41
69344--69387	22	2.0	22	100	0	88	22	27	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70754--70784	3	10.3	3	100	0	62	32	0	0	67	0.91
77628--77669	14	3.0	14	82	0	57	57	11	14	16	1.66
86525--86588	3	22.0	3	78	12	71	28	3	1	67	1.15
86523--86586	32	2.0	32	90	6	103	26	4	3	65	1.27
86707--86825	48	2.4	49	83	9	154	36	18	14	30	1.90
86707--86825	25	4.9	25	83	9	156	36	18	14	30	1.90
100095--100155	15	3.9	16	78	4	54	80	0	13	6	0.90
101106--101260	43	3.5	43	76	8	177	26	30	19	23	1.98
101109--101308	89	2.2	89	92	3	323	26	27	20	26	1.99
101644--101707	3	22.0	3	78	12	71	28	3	1	67	1.15
101642--101705	32	2.0	32	90	6	103	26	4	3	65	1.27
101766--101803	15	2.5	15	100	0	76	39	42	13	5	1.66
101843--101962	25	4.8	25	88	8	172	36	19	14	30	1.91
101841--101962	50	2.4	50	90	2	192	36	18	14	29	1.91
102262--102316	27	2.2	26	80	9	69	72	7	20	0	1.07
112474--112505	14	2.3	14	94	0	55	37	9	0	53	1.34
116117--116177	21	3.2	20	65	26	51	36	4	11	47	1.61
118184--118227	17	2.4	18	85	7	54	45	4	36	13	1.64
122133--123044	218	4.2	220	93	1	1473	28	28	14	27	1.96
122133--123044	55	16.7	55	92	2	1428	28	28	14	27	1.96
124041--124101	8	7.4	8	79	20	56	16	8	0	75	1.03
124063--124099	7	5.0	7	90	9	56	16	2	0	81	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124043--124099	15	4.0	15	78	17	68	15	5	0	78	0.91
124091--124124	12	2.8	12	100	0	68	14	23	0	61	1.33
140671--140715	20	2.3	19	81	7	54	68	2	0	28	1.01
140691--140733	16	2.6	16	85	3	50	67	0	0	32	0.91
141499--141540	20	2.1	20	100	0	84	30	23	9	35	1.87
145772--145882	29	3.8	29	85	2	132	54	3	12	28	1.54
150004--150038	12	2.9	12	86	0	52	40	0	0	60	0.97
150242--150282	21	2.0	21	85	0	55	36	17	19	26	1.94
155145--155263	37	3.3	37	85	5	163	44	19	4	31	1.70
155144--155262	35	3.3	36	88	5	170	44	20	3	31	1.68
155698--155779	25	3.3	25	98	0	155	23	17	26	32	1.96
158597--158628	15	2.1	15	94	0	55	6	25	15	53	1.65
159853--159935	35	2.3	37	85	6	125	44	15	6	33	1.71
165750--165778	8	3.8	8	90	9	51	27	0	0	72	0.85

Tables:   1

The End!