Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001190.1 Hibiscus syriacus cultivar Beakdansim tig00002361_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54154

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1069--1153
24
3.5
24
83
0
107
47
18
15
18
1.83
5435--5531
24
4.0
24
82
0
95
50
17
13
18
1.78
5431--5494
12
5.3
12
69
14
51
56
15
12
15
1.68
19796--19863
17
4.1
16
83
9
75
58
1
0
39
1.07
20615--20646
2
16.0
2
100
0
64
50
0
0
50
1.00
22235--22299
29
2.2
30
88
2
96
16
23
26
33
1.96
24388--24413
2
13.0
2
100
0
52
50
0
0
50
1.00
25504--25548
19
2.4
19
88
7
65
75
11
4
8
1.17
25410--25625
115
1.9
113
82
5
274
51
7
5
36
1.52
28947--29000
28
1.9
28
88
0
81
33
24
14
27
1.94
33796--33830
17
2.1
17
88
0
52
54
8
8
28
1.60
37174--37616
149
3.0
149
84
0
544
37
18
23
21
1.94
38682--38716
2
17.5
2
93
0
61
48
0
2
48
1.16
40133--40291
36
4.4
36
90
1
230
26
20
14
38
1.91
40277--40389
31
3.5
30
71
15
84
28
18
13
39
1.88
40241--40491
133
1.9
134
83
4
328
27
20
13
38
1.90
40169--40491
66
4.8
67
82
5
330
27
21
13
38
1.91
41807--41848
21
2.0
21
95
0
75
26
28
21
23
1.99
44169--44238
34
2.1
32
89
5
104
21
31
15
31
1.95
44523--44562
21
1.9
21
89
0
62
30
27
15
27
1.96
44653--44712
30
2.0
31
90
6
97
41
15
6
36
1.73
49666--49703
14
2.7
14
84
11
51
21
10
28
39
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49985--50025
20
2.0
20
85
0
55
34
0
0
65
0.93
50130--50171
21
2.0
21
90
0
66
35
16
16
30
1.92
52865--52983
59
2.0
59
91
6
197
37
15
9
37
1.79

Tables:   1

The End!