genome.fa.s1191.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001191.1 Hibiscus syriacus cultivar Beakdansim tig00002363_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159353

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2493--2557	33	2.0	33	100	0	130	18	35	21	24	1.96
19234--19289	21	2.7	21	81	8	69	23	25	17	33	1.96
19507--19565	18	2.9	22	67	27	56	28	38	15	16	1.89
21850--21939	20	4.5	20	90	0	135	37	20	18	23	1.94
21986--22072	20	4.3	20	95	0	129	22	19	21	35	1.96
22556--22647	21	4.4	21	71	4	78	21	36	17	23	1.94
24018--24053	14	2.6	14	90	0	54	30	0	22	47	1.52
24155--24250	33	2.8	33	90	3	138	41	20	23	13	1.88
24188--24256	19	3.8	19	73	21	76	44	18	21	14	1.85
24403--24470	33	2.1	33	91	0	109	41	19	25	14	1.89
24477--24565	20	4.4	20	85	2	126	17	21	24	35	1.95
24479--24565	40	2.2	40	91	4	140	18	20	24	36	1.95
24777--24831	20	2.8	20	94	0	92	23	18	21	36	1.95
24786--24842	20	2.8	20	89	2	69	31	15	21	31	1.94
25417--25442	2	13.0	2	100	0	52	50	0	0	50	1.00
28583--28626	15	2.8	15	83	10	52	61	0	4	34	1.16
32149--32186	20	1.9	20	88	0	58	47	0	10	42	1.38
32786--32824	21	1.9	20	84	5	51	64	5	0	30	1.15
32887--32949	25	2.5	25	100	0	126	47	14	11	26	1.77
48082--48150	10	7.1	10	76	12	72	18	23	30	27	1.98
48082--48152	19	3.7	19	88	5	90	18	25	29	26	1.98
48146--48203	17	3.4	17	95	0	98	18	41	24	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48193--48229	7	5.4	7	93	6	67	16	29	29	24	1.96
48193--48225	13	2.5	13	95	5	57	15	30	30	24	1.95
55396--55464	10	7.1	10	76	12	72	18	23	30	27	1.98
55396--55466	19	3.7	19	88	5	90	18	25	29	26	1.98
55460--55500	17	2.4	17	95	0	73	17	41	24	17	1.89
55490--55539	7	7.4	7	86	8	77	16	28	30	26	1.96
55490--55531	13	3.2	13	96	3	75	16	28	30	23	1.96
55490--55539	20	2.5	20	90	6	75	16	28	30	26	1.96
57291--57324	16	2.1	16	88	0	50	50	2	0	47	1.16
62227--62309	29	2.8	29	92	1	139	43	9	14	32	1.78
66933--67015	29	2.8	29	92	1	139	43	9	14	32	1.78
74278--74335	20	2.7	20	81	10	62	31	20	24	24	1.98
77220--77326	24	4.5	24	68	9	74	47	15	12	24	1.80
81213--81263	19	2.7	19	96	0	93	29	27	21	21	1.99
81356--81662	42	7.3	42	92	0	515	20	18	23	36	1.95
81346--81665	84	3.8	84	96	0	577	20	19	23	36	1.95
82252--82285	12	3.1	11	91	8	52	0	17	52	29	1.45
82381--82431	21	2.4	21	96	0	93	45	17	15	21	1.86
82409--82656	90	2.7	90	82	7	313	31	20	21	25	1.98
82553--82594	21	2.0	21	85	0	57	28	16	23	30	1.96
82603--82658	21	2.7	21	91	0	85	30	25	21	23	1.99
85335--85410	20	3.8	20	77	10	82	30	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86236--86295	24	2.5	24	77	0	66	28	16	18	36	1.93
88536--88570	18	1.9	18	94	0	61	54	25	2	17	1.57
88628--88910	140	2.0	140	97	0	539	28	12	14	43	1.83
88881--89085	20	10.9	20	75	12	191	34	21	17	26	1.96
88889--89043	54	2.9	54	93	0	256	35	24	16	23	1.95
88881--89134	74	3.5	73	73	7	228	34	22	17	25	1.96
88943--89134	20	10.2	20	73	14	70	33	22	18	25	1.97
89128--89166	20	2.0	20	94	0	69	7	20	25	46	1.77
89303--89334	14	2.3	14	94	0	55	46	18	0	34	1.49
90737--90841	21	5.0	21	71	0	84	24	19	37	19	1.94
91358--91403	20	2.3	20	96	0	83	36	26	23	13	1.91
91533--91601	20	3.5	20	80	7	86	15	21	24	37	1.93
93946--94132	31	6.0	31	96	1	322	37	22	19	20	1.94
94665--94707	20	2.1	21	87	8	63	32	11	6	48	1.66
95145--95189	21	2.1	21	84	8	56	17	24	26	31	1.97
98520--98675	31	5.0	31	94	1	260	38	23	18	19	1.93
99689--99733	21	2.1	21	87	0	63	15	24	28	31	1.96
103056--103242	31	6.0	31	96	1	322	37	22	19	20	1.94
103361--103474	58	2.0	58	81	6	133	28	21	10	40	1.86
103775--103817	20	2.1	21	87	8	63	32	11	6	48	1.66
104253--104297	21	2.1	21	87	0	63	15	24	28	31	1.96
105092--105142	19	2.6	19	81	3	66	39	21	19	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106603--106756	31	5.0	31	96	1	274	19	19	22	38	1.94
107904--107954	22	2.3	22	96	0	93	19	13	43	23	1.87
108120--108191	20	3.6	20	92	0	108	25	19	30	25	1.98
108238--108274	19	1.9	19	94	0	65	21	16	29	32	1.95
111703--111913	108	2.0	108	94	0	368	48	3	12	35	1.58
114472--114612	36	3.9	36	82	3	167	39	18	21	20	1.93
114467--114612	72	2.0	72	94	0	256	40	17	21	19	1.91
115886--115976	42	2.2	42	89	0	146	23	14	14	48	1.80
116173--116235	23	2.6	24	78	19	60	52	0	0	47	1.00
116190--116253	22	2.9	23	81	6	62	48	0	1	50	1.10
116201--116270	32	2.2	33	85	10	92	47	1	1	50	1.19
116415--116464	23	2.2	24	78	10	59	56	2	2	40	1.22
116801--116858	29	2.0	29	89	0	89	32	17	6	43	1.75
116813--116860	14	3.4	14	85	5	69	37	20	8	33	1.83
118265--118289	12	2.1	12	100	0	50	32	24	28	16	1.96
119375--119425	28	2.0	23	82	17	57	33	11	17	37	1.86
127185--127233	21	2.3	22	80	16	59	46	16	34	2	1.58
127673--128006	85	4.0	85	83	5	401	29	26	20	24	1.99
127673--128006	43	7.9	43	86	6	391	29	26	20	24	1.99
128065--128317	85	3.0	85	86	5	341	31	27	19	21	1.98
128065--128333	43	6.3	42	86	3	342	31	27	19	21	1.98
128031--128339	128	2.4	128	80	2	377	30	25	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129800--129919	59	2.0	59	86	0	168	48	15	7	28	1.72
131361--131474	58	2.0	58	87	6	169	37	18	18	25	1.93
132092--132118	3	9.0	3	100	0	54	66	0	0	33	0.92
135049--135471	54	7.8	54	89	3	600	27	20	19	32	1.97
136368--136401	16	2.1	16	100	0	68	64	23	0	11	1.26
138046--138151	7	15.3	7	69	2	61	21	3	30	44	1.70
138064--138134	28	2.5	27	84	8	97	25	4	28	42	1.73
138123--138147	13	1.9	13	100	0	50	24	4	24	48	1.68
138222--138288	7	9.7	7	73	9	57	16	0	41	41	1.48
138226--138283	21	2.8	21	77	12	66	15	0	37	46	1.46
142198--142310	57	2.0	57	94	0	199	33	19	20	26	1.96
147073--147161	38	2.4	38	90	7	146	12	11	39	37	1.79
155571--155754	77	2.4	77	87	0	251	34	24	10	29	1.90

Tables:   1

The End!