genome.fa.s1192.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001192.1 Hibiscus syriacus cultivar Beakdansim tig00002364_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54659

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4663--4698	2	19.0	2	88	11	58	50	0	0	50	1.00
5071--5113	22	1.9	23	86	13	63	27	0	4	67	1.10
5097--5129	16	1.9	17	88	11	50	36	0	3	60	1.12
5093--5131	17	2.3	19	79	20	50	33	0	2	64	1.08
7404--7452	23	2.1	23	84	0	62	24	2	8	65	1.31
9402--9500	51	1.9	51	83	4	128	20	29	30	20	1.97
11203--11237	6	5.8	6	100	0	70	17	51	0	31	1.45
26119--26203	23	3.7	23	73	14	84	18	24	24	31	1.98
26119--26198	24	3.4	24	74	17	87	17	25	25	32	1.97
28686--28761	2	38.0	2	100	0	152	50	0	0	50	1.00
32716--32779	23	2.8	23	82	0	83	26	23	28	21	1.99
32795--33012	103	2.1	103	97	0	409	36	23	13	25	1.92
33764--33984	64	3.5	64	82	7	236	29	18	19	33	1.95
38418--38481	23	2.8	23	87	0	92	26	25	28	20	1.99
39356--39566	64	3.3	64	83	5	257	27	17	20	34	1.95
39509--39611	45	2.3	45	100	0	206	32	15	18	33	1.92
52527--52590	17	3.9	16	78	13	60	70	1	21	6	1.18
52572--52611	18	2.3	18	86	4	55	70	0	25	5	1.08
53962--54461	51	9.9	51	96	1	927	29	16	27	26	1.96
53962--54461	152	3.3	152	97	1	932	29	16	27	26	1.96
53962--54461	252	2.0	254	96	1	925	29	16	27	26	1.96
54286--54627	51	6.5	52	84	8	215	30	15	25	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54427--54627	55	3.7	56	80	7	216	30	16	23	29	1.96

Tables:   1

The End!