Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001193.1 Hibiscus syriacus cultivar Beakdansim tig00002365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 141150
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:3758 original size:33 final size:34
Alignment explanation
Indices: 3721--3792 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
3711 ACCTTTACAA
3721 TTCCCTAG-TTTT-TCACGGGATAAACTAGAACCT
1 TTCCCTAGATTTTAT-ACGGGATAAACTAGAACCT
* * *
3754 TTCCCTAGATTTTATACGGGCTAAGCTAGAATCT
1 TTCCCTAGATTTTATACGGGATAAACTAGAACCT
3788 TTCCC
1 TTCCC
3793 CTTTACAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 8 0.24
34 25 0.74
35 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (34 bp):
TTCCCTAGATTTTATACGGGATAAACTAGAACCT
Found at i:4296 original size:20 final size:20
Alignment explanation
Indices: 4267--4304 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4257 TTTCAAAGGA
4267 ATGCACCGATGCACCAATCC
1 ATGCACCGATGCACCAATCC
*
4287 ATGCATCGATGCACCAAT
1 ATGCACCGATGCACCAAT
4305 GAATAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.34, G:0.16, T:0.18
Consensus pattern (20 bp):
ATGCACCGATGCACCAATCC
Found at i:4384 original size:65 final size:64
Alignment explanation
Indices: 4315--4474 Score: 189
Period size: 65 Copynumber: 2.5 Consensus size: 64
4305 GAATAAATTG
* * *
4315 AACATCGAATGCATTTTATGCATCGATGCACACA-CCATGCATCAATGCACTCAGG-TTTTTATG
1 AACATCGAATGCATTTCATGCATCGATGCACA-AGACATGCATCAATGCACTCAGGCTATTT-TG
4378 AA
64 -A
* * * **
4380 AACATCAAATGCATTTGATGCATCGATGCACAAGACATGTATTGATGCACTCAGGCTATTTTGA
1 AACATCGAATGCATTTCATGCATCGATGCACAAGACATGCATCAATGCACTCAGGCTATTTTGA
* *
4444 AACATCGAATGCACTTCATGCATCTATGCAC
1 AACATCGAATGCATTTCATGCATCGATGCAC
4475 TCTTAGTGCA
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
64 29 0.35
65 49 0.60
66 4 0.05
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.29
Consensus pattern (64 bp):
AACATCGAATGCATTTCATGCATCGATGCACAAGACATGCATCAATGCACTCAGGCTATTTTGA
Found at i:13131 original size:65 final size:64
Alignment explanation
Indices: 13059--13200 Score: 207
Period size: 65 Copynumber: 2.2 Consensus size: 64
13049 GAATAAATTG
* * * *
13059 AACATCGAATGCATTTTATGCATCGATGCACACA-CCATGCATCGATGCACTCAG-GTTTTTATG
1 AACATCGAATGCATTTGATGCATCGATGCACA-AGACATGCATCGATGCACTCAGACTCTTT-TG
13122 AA
64 -A
13124 AACATCGAATGCATTTGATGCATCGATGCACAAGACATGCATCGATGCACTCAGACTCTTTTGA
1 AACATCGAATGCATTTGATGCATCGATGCACAAGACATGCATCGATGCACTCAGACTCTTTTGA
13188 AACATCGAATGCA
1 AACATCGAATGCA
13201 CTAAGGGTCC
Statistics
Matches: 71, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
64 15 0.21
65 52 0.73
66 4 0.06
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (64 bp):
AACATCGAATGCATTTGATGCATCGATGCACAAGACATGCATCGATGCACTCAGACTCTTTTGA
Found at i:14165 original size:20 final size:20
Alignment explanation
Indices: 14121--14169 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
14111 TACTATTCAT
*
14121 TACTGTTCACACAGTATTGA
1 TACTGTTCACACAGTATAGA
*
14141 CACTGTTCACACAGTATCAG-
1 TACTGTTCACACAGTAT-AGA
14161 TACTGTTCA
1 TACTGTTCA
14170 TTACTGTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (20 bp):
TACTGTTCACACAGTATAGA
Found at i:18678 original size:30 final size:30
Alignment explanation
Indices: 18644--18707 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
18634 AAGAAGCAGA
18644 GAAAGAAGTTGGTGCTTTATGGCTGAAAAT
1 GAAAGAAGTTGGTGCTTTATGGCTGAAAAT
18674 GAAAGAAGTTGGTGCTTTATGGCTGAAAAT
1 GAAAGAAGTTGGTGCTTTATGGCTGAAAAT
18704 GAAA
1 GAAA
18708 CAAGAAGCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.36, C:0.06, G:0.30, T:0.28
Consensus pattern (30 bp):
GAAAGAAGTTGGTGCTTTATGGCTGAAAAT
Found at i:35021 original size:20 final size:21
Alignment explanation
Indices: 34996--35047 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
34986 TTTTCCCAAT
*
34996 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
35016 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
35037 TCGCAATGCGA
1 TCGCAATGCGA
35048 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:35061 original size:20 final size:20
Alignment explanation
Indices: 35036--35149 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
35026 AATTGGGAAA
*
35036 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
35056 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTGACT
* * *
35076 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
35097 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
35117 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
35137 TTCGCAACGCGAT
1 ATCGCAACGCGAT
35150 TTACATAGCG
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
19 2 0.02
20 64 0.79
21 13 0.16
22 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:35080 original size:61 final size:61
Alignment explanation
Indices: 35033--35149 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
35023 GCGAATTGGG
* * * * *
35033 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * *
35094 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGAT
35150 TTACATAGCG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:35745 original size:19 final size:19
Alignment explanation
Indices: 35723--35902 Score: 164
Period size: 19 Copynumber: 9.8 Consensus size: 19
35713 CAAAATTGCA
35723 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCG
35742 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCG
*
35761 TTGCGATTTTTATTTCGCGG
1 TTGCGATTTTCATTTCGC-G
35781 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCG
*
35800 TTGCGATTGTC---T-G-G
1 TTGCGATTTTCATTTCGCG
** **
35814 CCGCGATAGTCATTTCGCG
1 TTGCGATTTTCATTTCGCG
*
35833 TTGCGA--TTC---TCTCG
1 TTGCGATTTTCATTTCGCG
**
35847 TTGCGATAGTCATTTCCGCG
1 TTGCGATTTTCATTT-CGCG
* *
35867 TTGCGATTCTCATTATCTCG
1 TTGCGATTTTCATT-TCGCG
35887 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
35903 AACCAAAAGA
Statistics
Matches: 132, Mismatches: 16, Indels: 26
0.76 0.09 0.15
Matches are distributed among these distances:
14 19 0.14
15 1 0.01
16 3 0.02
17 3 0.02
18 1 0.01
19 55 0.42
20 49 0.37
21 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCG
Found at i:35795 original size:39 final size:38
Alignment explanation
Indices: 35723--35902 Score: 164
Period size: 33 Copynumber: 4.9 Consensus size: 38
35713 CAAAATTGCA
35723 TTGCGATTTTCATTTCGCGTTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTCATTTCGCG
*
35761 TTGCGATTTTTATTTCGCGGTTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGC-GTTGCGATTTTCATTTCGCG
* ** **
35800 TTGCGATTGTC---T-G-GCCGCGATAGTCATTTCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTCATTTCGCG
* **
35833 TTGCGA--TTC---TCTCGTTGCGATAGTCATTTCCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTCATTT-CGCG
* *
35867 TTGCGATTCTCATTATCTCGTTGCGATTTTCATTTC
1 TTGCGATTTTCATT-TCGCGTTGCGATTTTCATTTC
35903 AACCAAAAGA
Statistics
Matches: 118, Mismatches: 14, Indels: 19
0.78 0.09 0.13
Matches are distributed among these distances:
31 3 0.03
33 36 0.31
34 10 0.08
35 1 0.01
36 3 0.03
38 17 0.14
39 30 0.25
40 18 0.15
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (38 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTCATTTCGCG
Found at i:35879 original size:20 final size:20
Alignment explanation
Indices: 35845--35902 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
35835 GCGATTCTCT
**
35845 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
35865 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
35885 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
35903 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:37963 original size:42 final size:42
Alignment explanation
Indices: 37903--38025 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
37893 GCCCGACTCG
* * *
37903 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
37945 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
37987 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
38026 CCCGATTCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:37983 original size:21 final size:21
Alignment explanation
Indices: 37959--38025 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
37949 TCATTCCTCG
37959 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
37980 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
38001 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
38022 AGAG
1 AGAG
38026 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:38373 original size:14 final size:14
Alignment explanation
Indices: 38354--38398 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
38344 GTAAGTCTTA
38354 TATTTTCATTTGAT
1 TATTTTCATTTGAT
38368 TATTTT--TCTT-A-
1 TATTTTCAT-TTGAT
38379 TATTTTCATTTGAT
1 TATTTTCATTTGAT
38393 TATTTT
1 TATTTT
38399 TTTTTGTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
11 6 0.23
12 4 0.15
13 4 0.15
14 12 0.46
ACGTcount: A:0.20, C:0.07, G:0.04, T:0.69
Consensus pattern (14 bp):
TATTTTCATTTGAT
Found at i:38377 original size:25 final size:25
Alignment explanation
Indices: 38349--38399 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
38339 GAGGGGTAAG
38349 TCTTATATTTTCATTTGATTATTTT
1 TCTTATATTTTCATTTGATTATTTT
38374 TCTTATATTTTCATTTGATTATTTT
1 TCTTATATTTTCATTTGATTATTTT
38399 T
1 T
38400 TTTTGTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.08, G:0.04, T:0.69
Consensus pattern (25 bp):
TCTTATATTTTCATTTGATTATTTT
Found at i:38400 original size:16 final size:15
Alignment explanation
Indices: 38351--38399 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
38341 GGGGTAAGTC
38351 TTATATTTTCATTTGA
1 TTAT-TTTTCATTTGA
38367 TTATTTTTC--TT-A
1 TTATTTTTCATTTGA
38379 -TA-TTTTCATTTGA
1 TTATTTTTCATTTGA
38392 TTATTTTT
1 TTATTTTT
38400 TTTTGTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 11
0.72 0.00 0.28
Matches are distributed among these distances:
10 5 0.18
11 2 0.07
12 3 0.11
13 3 0.11
14 2 0.07
15 9 0.32
16 4 0.14
ACGTcount: A:0.20, C:0.06, G:0.04, T:0.69
Consensus pattern (15 bp):
TTATTTTTCATTTGA
Found at i:39319 original size:20 final size:20
Alignment explanation
Indices: 39276--39313 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
39266 AATAGTTTCT
39276 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
39296 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
39314 GAGAAACTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:39590 original size:22 final size:22
Alignment explanation
Indices: 39563--39606 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
39553 GATGGAGATA
39563 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
39585 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
39607 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:39819 original size:20 final size:20
Alignment explanation
Indices: 39794--39887 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
39784 GATTATGTAT
39794 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
39814 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* *** * *
39834 TATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGA-AAGTCAG
* *
39855 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
39875 TATCGCATTGCGA
1 TATCGCGTTGCGA
39888 TTTTCCCAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:39859 original size:41 final size:41
Alignment explanation
Indices: 39814--39891 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
39804 CGAAAGTCAG
* * *
39814 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTTTTAT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTTTTAT
* *
39855 TATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTT
39892 CCCAATTCGC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.40
Consensus pattern (41 bp):
TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTTTTAT
Found at i:39888 original size:20 final size:20
Alignment explanation
Indices: 39774--39888 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
39764 CGCTTTGAAA
*
39774 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* *
39795 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
39815 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
39835 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
39856 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
39876 ATCGCATTGCGAT
1 ATCGCATTGCGAT
39889 TTTCCCAATT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
19 2 0.03
20 50 0.66
21 24 0.32
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:39907 original size:41 final size:41
Alignment explanation
Indices: 39814--39909 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 41
39804 CGAAAGTCAG
* * * ** *
39814 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCAA
* *
39855 TATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAA
1 TATCGCGTTGCGATAGTAAGTATCGCATTGCGATTTT-CCAA
39897 T-TCGCGTTGCGAT
1 TATCGCGTTGCGAT
39910 TTACTTATTC
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
41 43 0.96
42 2 0.04
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.38
Consensus pattern (41 bp):
TATCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCAA
Found at i:51358 original size:20 final size:20
Alignment explanation
Indices: 51330--51368 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
51320 GCTTCAAGAA
51330 TTATCTTTAGGAATTATCTC
1 TTATCTTTAGGAATTATCTC
*
51350 TTATTTTTAGGAATTATCT
1 TTATCTTTAGGAATTATCT
51369 TGTTGTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.10, G:0.10, T:0.54
Consensus pattern (20 bp):
TTATCTTTAGGAATTATCTC
Found at i:58693 original size:15 final size:15
Alignment explanation
Indices: 58650--58694 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
58640 ACAAAAAGGC
58650 TGAAGAGAAGAAAGA
1 TGAAGAGAAGAAAGA
* *
58665 TGCAG-GTAAAAAAGA
1 TGAAGAG-AAGAAAGA
58680 TGAAGAGAAGAAAGA
1 TGAAGAGAAGAAAGA
58695 CCCTAAGTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.58, C:0.02, G:0.31, T:0.09
Consensus pattern (15 bp):
TGAAGAGAAGAAAGA
Found at i:59980 original size:3 final size:3
Alignment explanation
Indices: 59974--60032 Score: 100
Period size: 3 Copynumber: 19.7 Consensus size: 3
59964 TTTTTATCCA
* *
59974 TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
60022 TAT TAT TAT TA
1 TAT TAT TAT TA
60033 AATATATATT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:60563 original size:20 final size:19
Alignment explanation
Indices: 60538--60576 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
60528 GAAACTAGAG
*
60538 ACAGAGACAGAGAAAAAAAA
1 ACAGAGAAAG-GAAAAAAAA
60558 ACAGAGAAAGGAAAAAAAA
1 ACAGAGAAAGGAAAAAAAA
60577 TAAACTATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.72, C:0.08, G:0.21, T:0.00
Consensus pattern (19 bp):
ACAGAGAAAGGAAAAAAAA
Found at i:61503 original size:20 final size:21
Alignment explanation
Indices: 61466--61506 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
61456 GATATTTTTA
**
61466 TTTTATTATATTGTTAAATAT
1 TTTTATTATATTCATAAATAT
61487 TTTTA-TATATTCATAAATAT
1 TTTTATTATATTCATAAATAT
61507 ACATATAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTTATTATATTCATAAATAT
Found at i:72883 original size:7 final size:7
Alignment explanation
Indices: 72871--72905 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
72861 TGCTTGAAGA
72871 AAAAAAG
1 AAAAAAG
*
72878 AAAAAAA
1 AAAAAAG
72885 AAGAAAAG
1 AA-AAAAG
72893 AAAAAAG
1 AAAAAAG
72900 AAAAAA
1 AAAAAA
72906 AGGGGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:72885 original size:10 final size:10
Alignment explanation
Indices: 72870--72906 Score: 56
Period size: 10 Copynumber: 3.5 Consensus size: 10
72860 ATGCTTGAAG
72870 AAAAAAAGAA
1 AAAAAAAGAA
72880 AAAAAAAGAAA
1 AAAAAAAG-AA
72891 AGAAAAAAGAA
1 A-AAAAAAGAA
72902 AAAAA
1 AAAAA
72907 GGGGTCAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 12 0.48
11 6 0.24
12 7 0.28
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:72893 original size:15 final size:15
Alignment explanation
Indices: 72867--72907 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
72857 ATTATGCTTG
72867 AAGAAAAAAAGAAAA
1 AAGAAAAAAAGAAAA
72882 AA-AAAGAAAAGAAAA
1 AAGAAA-AAAAGAAAA
72897 AAGAAAAAAAG
1 AAGAAAAAAAG
72908 GGGTCAAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 3 0.12
15 18 0.75
16 3 0.12
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAGAAAAAAAGAAAA
Found at i:72896 original size:12 final size:11
Alignment explanation
Indices: 72870--72906 Score: 58
Period size: 12 Copynumber: 3.4 Consensus size: 11
72860 ATGCTTGAAG
72870 AAAAAAAG-AA
1 AAAAAAAGAAA
72880 AAAAAAAGAAA
1 AAAAAAAGAAA
72891 AGAAAAAAGAAA
1 A-AAAAAAGAAA
72903 AAAA
1 AAAA
72907 GGGGTCAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 8 0.32
11 6 0.24
12 11 0.44
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:73269 original size:17 final size:17
Alignment explanation
Indices: 73234--73277 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
73224 CTATTTCAAG
*
73234 TTCAATTTA-TTTGAGA
1 TTCAATTTATTTTGAAA
73250 TTCAATTTATTTTGAAA
1 TTCAATTTATTTTGAAA
73267 TTCAATTTATT
1 TTCAATTTATT
73278 CTTTTATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 9 0.35
17 17 0.65
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.55
Consensus pattern (17 bp):
TTCAATTTATTTTGAAA
Found at i:74285 original size:83 final size:84
Alignment explanation
Indices: 74028--74690 Score: 1208
Period size: 83 Copynumber: 7.9 Consensus size: 84
74018 ATATCTTAGT
*
74028 CCAATCATTGAATTTGAAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
1 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
74093 CTGATCTGATTTGGCAGAA
66 CTGATCTGATTTGGCAGAA
74112 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
1 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
74177 CTGATCTGATTTGGCAGAA
66 CTGATCTGATTTGGCAGAA
* *
74196 CTAATCATTGAATTTGGAAGATGAATTTGC-CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
1 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
74260 CTGATCTGATTTGGCAGAA
66 CTGATCTGATTTGGCAGAA
74279 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
1 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
74344 CTGATCTGATTTGGCAGAA
66 CTGATCTGATTTGGCAGAA
* * *
74363 CTAATCATTGAATTTGGAAGATGGATTTGC-CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
1 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
74427 CTGATCTGATTTGGCAGAA
66 CTGATCTGATTTGGCAGAA
74446 CCAATCATTGAATTTGGAAGATGAATTTGC-CAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
1 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
*
74510 TTGATCTGATTTGGCAGAA
66 CTGATCTGATTTGGCAGAA
*
74529 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
1 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
74594 CTGATCTGATTTGGCAGAA
66 CTGATCTGATTTGGCAGAA
74613 CCAATCATTGAATTTGGAAGATGAATTTGC-CAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
1 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
* *
74677 CTAATCTGGTTTGG
66 CTGATCTGATTTGG
74691 TAAAAATTAC
Statistics
Matches: 560, Mismatches: 17, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
83 287 0.51
84 273 0.49
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (84 bp):
CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
CTGATCTGATTTGGCAGAA
Found at i:74307 original size:167 final size:167
Alignment explanation
Indices: 74030--74690 Score: 1227
Period size: 167 Copynumber: 4.0 Consensus size: 167
74020 ATCTTAGTCC
* *
74030 AATCATTGAATTTGAAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTATCT
1 AATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCT
74095 GATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGA
66 GATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGC-CAATAGCATCTTTTGGA
74160 AGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAACT
130 AGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAACT
74198 AATCATTGAATTTGGAAGATGAATTTGC-CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCT
1 AATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCT
74262 GATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGA
66 GATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGC-CAATAGCATCTTTTGGA
74327 AGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAACT
130 AGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAACT
*
74365 AATCATTGAATTTGGAAGATGGATTTGC-CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCT
1 AATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCT
74429 GATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCCAATAGCATCTTTTGGAA
66 GATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCCAATAGCATCTTTTGGAA
* *
74494 GTGTTCTTTGAGTTATTTGATCTGATTTGGCAGAACC
131 GTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAACT
74531 AATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCT
1 AATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCT
74596 GATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCCAATAGCATCTTTTGGAA
66 GATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCCAATAGCATCTTTTGGAA
* *
74661 GTGTTCTTTGAGTTATCTAATCTGGTTTGG
131 GTGTTCTTTGAGTTATCTGATCTGATTTGG
74691 TAAAAATTAC
Statistics
Matches: 483, Mismatches: 9, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
166 80 0.17
167 376 0.78
168 27 0.06
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (167 bp):
AATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCT
GATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCCAATAGCATCTTTTGGAA
GTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAACT
Found at i:74500 original size:250 final size:250
Alignment explanation
Indices: 74028--74690 Score: 1227
Period size: 250 Copynumber: 2.6 Consensus size: 250
74018 ATATCTTAGT
*
74028 CCAATCATTGAATTTGAAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
1 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
74093 CTGATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTG
66 CTGATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGC-CAATAGCATCTTTTG
*
74158 GAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAACTAATCATTGAATTTGGAAGATGAATT
130 GAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATT
74223 TGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAA
195 TGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAA
74279 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
1 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
* * *
74344 CTGATCTGATTTGGCAGAACTAATCATTGAATTTGGAAGATGGATTTGCCAATAGCATCTTCTGG
66 CTGATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCCAATAGCATCTTTTGG
74409 AAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTT
131 AAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTT
* *
74474 GCCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTATTTGATCTGATTTGGCAGAA
196 GCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAA
*
74529 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
1 CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
74594 CTGATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCCAATAGCATCTTTTGG
66 CTGATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCCAATAGCATCTTTTGG
* *
74659 AAGTGTTCTTTGAGTTATCTAATCTGGTTTGG
131 AAGTGTTCTTTGAGTTATCTGATCTGATTTGG
74691 TAAAAATTAC
Statistics
Matches: 399, Mismatches: 13, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
250 288 0.72
251 111 0.28
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (250 bp):
CCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTAT
CTGATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCCAATAGCATCTTTTGG
AAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTT
GCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAA
Found at i:75622 original size:113 final size:113
Alignment explanation
Indices: 75419--75977 Score: 920
Period size: 113 Copynumber: 4.9 Consensus size: 113
75409 CAAAGATTCA
* * * * * *
75419 AATCTATCATTTGATGGATTATCTTTTCCAGAGAAGGTTCATAATGAGAAGAATTCATCTGAAAA
1 AATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
75484 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
66 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
*
75532 AATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
75597 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
66 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
75645 AATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
* *
75710 AGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACATG
66 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
* * * * * * *
75758 AATTCGTTAATTGATGGATCATCCTTTCCAGAGAAAGTTCATAATGAGAATAACTCATCTGAAGA
1 AATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
*
75823 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACTTG
66 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
* * *
75871 AATTCATCAATTGATGGATCAGCCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
**
75936 AGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTT
66 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTT
75978 GTTTGATACT
Statistics
Matches: 421, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
113 421 1.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (113 bp):
AATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
Found at i:76305 original size:3 final size:3
Alignment explanation
Indices: 76299--76354 Score: 94
Period size: 3 Copynumber: 18.7 Consensus size: 3
76289 TTTTTATCCA
* *
76299 TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
76347 TAT TAT TA
1 TAT TAT TA
76355 ATAAATATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:76832 original size:1 final size:1
Alignment explanation
Indices: 76826--76853 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
76816 CCCGAACCTG
76826 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
76854 GCAGAGACAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:77833 original size:20 final size:21
Alignment explanation
Indices: 77796--77836 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
77786 GATATTTTTA
**
77796 TTTTATTATATTGTTAAATAT
1 TTTTATTATATTCATAAATAT
77817 TTTTA-TATATTCATAAATAT
1 TTTTATTATATTCATAAATAT
77837 ACATATAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTTATTATATTCATAAATAT
Found at i:79324 original size:69 final size:71
Alignment explanation
Indices: 79190--79331 Score: 211
Period size: 69 Copynumber: 2.0 Consensus size: 71
79180 TATCATTGGT
* *
79190 AAATAAAAAAATTAAAAATCATACATCCAAAACCATTTTTATTAATTTTTATTTTATTTTGAGTA
1 AAATAAAAAAATTAAAAATCATACATCCAAAACCATTATTATTAATTTTCATTTTATTTTGAGTA
79255 AGTTTA
66 AGTTTA
*
79261 AAAT-AAAAAATTGAAAATCATA-AGTCCAAAACCA-TATTATT-ATTTTCATTATTATTTTGAG
1 AAATAAAAAAATTAAAAATCATACA-TCCAAAACCATTATTATTAATTTTCATT-TTATTTTGAG
79322 TAAGTTTA
64 TAAGTTTA
79330 AA
1 AA
79332 TTGACTCAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
68 8 0.12
69 27 0.41
70 27 0.41
71 4 0.06
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40
Consensus pattern (71 bp):
AAATAAAAAAATTAAAAATCATACATCCAAAACCATTATTATTAATTTTCATTTTATTTTGAGTA
AGTTTA
Found at i:84714 original size:21 final size:21
Alignment explanation
Indices: 84690--84729 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
84680 CTATTGATAA
*
84690 GTTTTATTTAGTTAT-TATTTT
1 GTTTTAATTA-TTATGTATTTT
84711 GTTTTAATTATTATGTATT
1 GTTTTAATTATTATGTATT
84730 AGTTTTTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.68
Consensus pattern (21 bp):
GTTTTAATTATTATGTATTTT
Found at i:84734 original size:20 final size:21
Alignment explanation
Indices: 84689--84735 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
84679 TCTATTGATA
*
84689 AGTTTTATTTAGTTATTATTT
1 AGTTTTAATTAGTTATTATTT
*
84710 TGTTTTAATTA-TTATGTA-TT
1 AGTTTTAATTAGTTAT-TATTT
84730 AGTTTT
1 AGTTTT
84736 TGTGGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (21 bp):
AGTTTTAATTAGTTATTATTT
Found at i:85016 original size:13 final size:13
Alignment explanation
Indices: 85000--85048 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
84990 TTTTAGGATA
85000 TTATTTTAAATAT
1 TTATTTTAAATAT
**
85013 TTATTTTATCTTAT
1 TTATTTTA-AATAT
*
85027 TTATTTTAGATAT
1 TTATTTTAAATAT
*
85040 TTAGTTTAA
1 TTATTTTAA
85049 TAGTTTTAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
13 18 0.62
14 11 0.38
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (13 bp):
TTATTTTAAATAT
Found at i:85056 original size:27 final size:27
Alignment explanation
Indices: 85000--85056 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
84990 TTTTAGGATA
* **
85000 TTATTTTAAATATTTATTTTATCTTAT
1 TTATTTTAAATATTTATTTAATAGTAT
*
85027 TTATTTTAGATATTTAGTTTAATAGT-T
1 TTATTTTAAATATTTA-TTTAATAGTAT
85054 TTA
1 TTA
85057 AGTATTTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (27 bp):
TTATTTTAAATATTTATTTAATAGTAT
Found at i:85138 original size:79 final size:77
Alignment explanation
Indices: 84998--85157 Score: 241
Period size: 79 Copynumber: 2.1 Consensus size: 77
84988 AGTTTTAGGA
* *
84998 TATTATTTTAAATATTTATTTTATCTTATTTATTTTAGATATTTAGTTTAATAGTTTTAAGTATT
1 TATTATTTTAAATATATATTTTATCTTATTTATTTTAGATATTTAGTTAAATAGTTTTAAGTATT
85063 TTAATTAGAATT
66 TTAATTAGAATT
* *
85075 TATTATTTTAAATATATA-TTTATCTTATCTTTGTTTTAGGTATTTTAGTTAAATAGTTTTAAGT
1 TATTATTTTAAATATATATTTTATCTTA--TTTATTTTAGATA-TTTAGTTAAATAGTTTTAAGT
*
85139 ATTTTAATTAGGATT
63 ATTTTAATTAGAATT
85154 TATT
1 TATT
85158 TTCTTTATTT
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
76 9 0.12
77 17 0.23
78 11 0.15
79 38 0.51
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.59
Consensus pattern (77 bp):
TATTATTTTAAATATATATTTTATCTTATTTATTTTAGATATTTAGTTAAATAGTTTTAAGTATT
TTAATTAGAATT
Found at i:85188 original size:79 final size:80
Alignment explanation
Indices: 84998--85199 Score: 206
Period size: 79 Copynumber: 2.6 Consensus size: 80
84988 AGTTTTAGGA
** * * *
84998 TATTATTTTAAATATTTATTTTATCTTAT--TT-ATTTTAGATA-TTTAGTTTAATAGTTTTAAG
1 TATTATTTTAAATATAGA-TTTATCTTATCCTTGTTTTTAGGTATTTTAGTTAAATAGTTTTAAG
85059 TATTTTAATTAGAATT
65 TATTTTAATTAGAATT
* *
85075 TATTATTTTAAATATATATTTATCTTATCTTTG-TTTTAGGTATTTTAGTTAAATAGTTTTAAGT
1 TATTATTTTAAATATAGATTTATCTTATCCTTGTTTTTAGGTATTTTAGTTAAATAGTTTTAAGT
*
85139 ATTTTAATTAGGATT
66 ATTTTAATTAGAATT
* * *
85154 TATT-TTCTTTATTTTAGGA-TTATCTT-TACCTTGTTTTTAGG-ATTTT
1 TATTATT-TTAAATATA-GATTTATCTTAT-CCTTGTTTTTAGGTATTTT
85200 GAAGGTTATA
Statistics
Matches: 108, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
76 10 0.09
77 17 0.16
78 13 0.12
79 60 0.56
80 8 0.07
ACGTcount: A:0.28, C:0.03, G:0.09, T:0.59
Consensus pattern (80 bp):
TATTATTTTAAATATAGATTTATCTTATCCTTGTTTTTAGGTATTTTAGTTAAATAGTTTTAAGT
ATTTTAATTAGAATT
Found at i:88107 original size:23 final size:23
Alignment explanation
Indices: 88078--88125 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
88068 GAGATCTTAG
88078 AAGTGTTCAAAAAAGTTCAAGTT
1 AAGTGTTCAAAAAAGTTCAAGTT
*
88101 AAGTGTTCCAAAAAGTTCAAGTT
1 AAGTGTTCAAAAAAGTTCAAGTT
88124 AA
1 AA
88126 CATACCTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.44, C:0.10, G:0.17, T:0.29
Consensus pattern (23 bp):
AAGTGTTCAAAAAAGTTCAAGTT
Found at i:101608 original size:15 final size:15
Alignment explanation
Indices: 101596--101644 Score: 98
Period size: 15 Copynumber: 3.3 Consensus size: 15
101586 CATTACAAGA
101596 ACTTGTTTTACAAAC
1 ACTTGTTTTACAAAC
101611 ACTTGTTTTACAAAC
1 ACTTGTTTTACAAAC
101626 ACTTGTTTTACAAAC
1 ACTTGTTTTACAAAC
101641 ACTT
1 ACTT
101645 TCCTGTGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (15 bp):
ACTTGTTTTACAAAC
Found at i:101630 original size:30 final size:30
Alignment explanation
Indices: 101588--101644 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
101578 ACAAATTCCA
101588 TTACAAGAACTTGTTTTACAAACACTTGTT
1 TTACAAGAACTTGTTTTACAAACACTTGTT
101618 TTACAA-ACACTTGTTTTACAAACACTT
1 TTACAAGA-ACTTGTTTTACAAACACTT
101645 TCCTGTGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (30 bp):
TTACAAGAACTTGTTTTACAAACACTTGTT
Found at i:108455 original size:25 final size:24
Alignment explanation
Indices: 108427--108486 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 24
108417 CTTTAAAAAT
108427 AAAAATAAAAACAAAGAAAACTTCG
1 AAAAATAAAAA-AAAGAAAACTTCG
108452 AAAAAT----AAAAGAAAACTTCG
1 AAAAATAAAAAAAAGAAAACTTCG
108472 AAAAATAAAAGAAAA
1 AAAAATAAAA-AAAA
108487 CTTTTATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
20 19 0.63
21 1 0.03
25 10 0.33
ACGTcount: A:0.72, C:0.08, G:0.08, T:0.12
Consensus pattern (24 bp):
AAAAATAAAAAAAAGAAAACTTCG
Found at i:108462 original size:20 final size:20
Alignment explanation
Indices: 108439--108489 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
108429 AAATAAAAAC
108439 AAAGAAAACTTCGAAAAATA
1 AAAGAAAACTTCGAAAAATA
108459 AAAGAAAACTTCGAAAAATA
1 AAAGAAAACTTCGAAAAATA
108479 AAAGAAAACTT
1 AAAGAAAACTT
108490 TTATAAAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.65, C:0.10, G:0.10, T:0.16
Consensus pattern (20 bp):
AAAGAAAACTTCGAAAAATA
Found at i:109218 original size:10 final size:10
Alignment explanation
Indices: 109198--109232 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
109188 ACATGACTCA
109198 ATATCTCACAC
1 ATAT-TCACAC
109209 ATATTCACAC
1 ATATTCACAC
*
109219 AGATTCACAC
1 ATATTCACAC
109229 ATAT
1 ATAT
109233 CCGCTCAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 18 0.82
11 4 0.18
ACGTcount: A:0.40, C:0.29, G:0.03, T:0.29
Consensus pattern (10 bp):
ATATTCACAC
Found at i:109637 original size:19 final size:19
Alignment explanation
Indices: 109613--109651 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
109603 TCGAATGCAT
*
109613 TCCATGCACCGATGCACTC
1 TCCATGCACCGATACACTC
*
109632 TCCATGCATCGATACACTC
1 TCCATGCACCGATACACTC
109651 T
1 T
109652 GAATTTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.38, G:0.13, T:0.26
Consensus pattern (19 bp):
TCCATGCACCGATACACTC
Found at i:109752 original size:64 final size:65
Alignment explanation
Indices: 109599--109759 Score: 200
Period size: 65 Copynumber: 2.5 Consensus size: 65
109589 GAATTAATTG
* * *** * *
109599 AACATCGAATGCATTCCATGCACCGATGCACTCTCCATGCATCGATACACTCTGAATTTTTTCAA
1 AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCGATACACTCAGAATTTTCTCAA
* * **
109664 AACATCGAATGCATTTGATGCATCGATGCACAAGCCATGCATCGATGCA-TCAGGCTATTTCTC-
1 AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCGATACACTCAGAAT-TTTCTCA
109727 A
65 A
109728 AACATCGAATGCATTTCATGCATCGATGCACA
1 AACATCGAATGCATTTCATGCATCGATGCACA
109760 CTTGGTGCAC
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
64 36 0.43
65 47 0.57
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (65 bp):
AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCGATACACTCAGAATTTTCTCAA
Found at i:114582 original size:19 final size:19
Alignment explanation
Indices: 114558--114596 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
114548 TCGAATGCAT
114558 TCCATGCACCGATGCACTC
1 TCCATGCACCGATGCACTC
*
114577 TCCATGCATCGATGCACTC
1 TCCATGCACCGATGCACTC
114596 T
1 T
114597 GAATTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.38, G:0.15, T:0.26
Consensus pattern (19 bp):
TCCATGCACCGATGCACTC
Found at i:114613 original size:65 final size:63
Alignment explanation
Indices: 114495--114703 Score: 206
Period size: 65 Copynumber: 3.2 Consensus size: 63
114485 TATTCAAAGG
** *
114495 CATGCACCGATGCA-TCAGTCCATGCATCGATGCATCGATGAATTAATT-GAACATCGAATGCAT
1 CATGCACCGATGCACTC--TCCATGCATCGATGCATC--TGAATTTTTTCAAACATCGAATGCAT
*
114558 TC
62 TT
*
114560 CATGCACCGATGCACTCTCCATGCATCGATGCACTCTGAATTTTTTCAAAACATTGAATGCATTT
1 CATGCACCGATGCACTCTCCATGCATCGATGCA-TCTGAATTTTTTC-AAACATCGAATGCATTT
* * *** * ** *
114625 GATGCATCGATGCACAAGCCATGCATCGATGCATCAGGCTATTTCTCAAACATCGAATGCATTT
1 CATGCACCGATGCACTCTCCATGCATCGATGCATCTGAAT-TTTTTCAAACATCGAATGCATTT
*
114689 CATGCATCGATGCAC
1 CATGCACCGATGCAC
114704 ACTTGGTGCA
Statistics
Matches: 123, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
63 8 0.07
64 50 0.41
65 63 0.51
66 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (63 bp):
CATGCACCGATGCACTCTCCATGCATCGATGCATCTGAATTTTTTCAAACATCGAATGCATTT
Found at i:114719 original size:64 final size:64
Alignment explanation
Indices: 114495--114724 Score: 207
Period size: 64 Copynumber: 3.6 Consensus size: 64
114485 TATTCAAAGG
* * * *
114495 CATGCACCGATGCATCAGTCCATGCATCGATGCATCGATGAATTAAT-T--GAACATCGAATGCA
1 CATGCATCGATGCA-CACTCCATGCATCGATGCATC-A-GAATT-TTCTCAAAACATCGAATGCA
*
114557 TTC
62 TTT
* * * * *
114560 CATGCACCGATGCACTCTCCATGCATCGATGCACTCTGAATTTTTTCAAAACATTGAATGCATTT
1 CATGCATCGATGCACACTCCATGCATCGATGCA-TCAGAATTTTCTCAAAACATCGAATGCATTT
* ** **
114625 GATGCATCGATGCACAAGCCATGCATCGATGCATCAGGCTATTTCTC-AAACATCGAATGCATTT
1 CATGCATCGATGCACACTCCATGCATCGATGCATCAGAAT-TTTCTCAAAACATCGAATGCATTT
*** *
114689 CATGCATCGATGCACACTTGGTGCACCGATGCATCA
1 CATGCATCGATGCACACTCCATGCATCGATGCATCA
114725 AGTGTTCCAA
Statistics
Matches: 136, Mismatches: 24, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
62 1 0.01
63 6 0.04
64 66 0.49
65 63 0.46
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (64 bp):
CATGCATCGATGCACACTCCATGCATCGATGCATCAGAATTTTCTCAAAACATCGAATGCATTT
Found at i:117139 original size:20 final size:20
Alignment explanation
Indices: 117114--117153 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
117104 AATAATGAAA
*
117114 AAATAATTCTTAAAAATAAT
1 AAATAATTCCTAAAAATAAT
*
117134 AAATAATTCCTAAAAGTAAT
1 AAATAATTCCTAAAAATAAT
117154 TCTTAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (20 bp):
AAATAATTCCTAAAAATAAT
Found at i:134543 original size:20 final size:19
Alignment explanation
Indices: 134499--134544 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
134489 CATGAATTGA
134499 TTTTTTTTAATAAAATATT
1 TTTTTTTTAATAAAATATT
134518 TGTTTTTTTAATAAAATATAT
1 T-TTTTTTTAATAAAATAT-T
134539 TTTTTT
1 TTTTTT
134545 AATTTAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 22 0.88
21 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTTTTTAATAAAATATT
Found at i:135361 original size:33 final size:34
Alignment explanation
Indices: 135286--135369 Score: 109
Period size: 33 Copynumber: 2.5 Consensus size: 34
135276 ATTTTGGTAT
*
135286 TCGGGTCGGATTTTTTT-TAAAAAACTTTCAGGA
1 TCGGGTCGGATTTTTTTATAAAAAACATTCAGGA
** * *
135319 TCGATTCGGATTTTTTTATAAAAAA-ATTCGGGC
1 TCGGGTCGGATTTTTTTATAAAAAACATTCAGGA
135352 TCGGGTCGGATTTTTTTA
1 TCGGGTCGGATTTTTTTA
135370 AGTTTGATAT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 36 0.84
34 7 0.16
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (34 bp):
TCGGGTCGGATTTTTTTATAAAAAACATTCAGGA
Found at i:135403 original size:102 final size:100
Alignment explanation
Indices: 135297--135491 Score: 234
Period size: 102 Copynumber: 1.9 Consensus size: 100
135287 CGGGTCGGAT
*
135297 TTTTTTTAAAAAACTTTCAGGATCGATTCGGATTTTTTTATAA-AAAAATTCGGGCTCGGGTC-G
1 TTTTTTTAAAAAA-TTTCA--ATCGAGTCGGATTTTTTTA-AATAAAAATTCGGG-TCGGGTCAG
*
135360 -GATTTTTTTAAGTTTGATATTCGGGTCGGGTCATTCAGG
61 TGATTTTTTTAAGTGTGATATTCGGGTCGGGTCATTCAGG
* * ** * *
135399 TTTTTTTAAAAAATTTCAATCGGGTCGGGTTTTTTTAAATTGATATTCGGGTCGGGTCAGTTAGG
1 TTTTTTTAAAAAATTTCAATCGAGTCGGATTTTTTTAAATAAAAATTCGGGTCGGGTCAG-T-GA
135464 TTTTTTTAAGTGTGATATTCGGGTCGGG
64 TTTTTTTAAGTGTGATATTCGGGTCGGG
135492 GTCGGCCGAG
Statistics
Matches: 80, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
98 9 0.11
99 25 0.31
101 5 0.06
102 41 0.51
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.43
Consensus pattern (100 bp):
TTTTTTTAAAAAATTTCAATCGAGTCGGATTTTTTTAAATAAAAATTCGGGTCGGGTCAGTGATT
TTTTTAAGTGTGATATTCGGGTCGGGTCATTCAGG
Found at i:135494 original size:38 final size:36
Alignment explanation
Indices: 135426--135530 Score: 131
Period size: 38 Copynumber: 2.9 Consensus size: 36
135416 AATCGGGTCG
* **
135426 GGTTTTTTTAAAT-TGATATTCGGGTCGGGTCAGTTA
1 GGTTTTTTTAAGTGTGATATTCGGGTCGGGTC-GGCA
*
135462 GGTTTTTTTAAGTGTGATATTCGGGTCGGGGTCGGCC
1 GGTTTTTTTAAGTGTGATATTCGGGTC-GGGTCGGCA
*
135499 GAGTTTTTTTAAGTGTGATATTCGGGTAGGGT
1 G-GTTTTTTTAAGTGTGATATTCGGGTCGGGT
135531 TCGAGTTTAG
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
36 12 0.20
37 19 0.31
38 30 0.49
ACGTcount: A:0.16, C:0.09, G:0.33, T:0.42
Consensus pattern (36 bp):
GGTTTTTTTAAGTGTGATATTCGGGTCGGGTCGGCA
Done.