genome.fa.s1194.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001194.1 Hibiscus syriacus cultivar Beakdansim tig00002367_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109815

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3276--3399	64	1.9	64	85	11	173	29	20	18	30	1.97
11642--11679	20	1.9	20	94	0	67	26	28	21	23	1.99
11684--11832	64	2.3	63	86	8	187	30	20	16	32	1.95
15156--15199	18	2.4	18	88	7	63	70	0	2	27	0.99
17106--17135	2	15.0	2	100	0	60	50	0	0	50	1.00
18060--18106	17	2.8	17	80	6	51	59	4	12	23	1.51
18328--18387	31	1.9	31	100	0	120	43	6	6	43	1.57
19048--19163	24	4.4	28	83	13	149	55	1	0	43	1.10
19048--19163	52	2.2	52	98	1	223	55	1	0	43	1.10
26338--26419	30	2.7	30	81	10	105	39	7	8	45	1.63
32339--32433	42	2.2	44	90	5	160	29	8	6	55	1.54
32472--32499	2	14.0	2	100	0	56	50	0	0	50	1.00
36572--36614	21	2.1	20	82	4	50	62	6	6	23	1.45
38539--38623	32	2.7	30	79	13	91	40	1	3	55	1.25
38541--38625	10	8.1	10	70	18	57	40	1	3	55	1.25
38539--38626	31	2.8	31	78	11	90	40	1	3	54	1.24
39225--39311	31	2.8	30	81	10	95	54	4	1	40	1.29
41171--41213	14	3.0	14	82	3	59	27	18	6	46	1.75
41163--41227	29	2.3	27	80	12	78	27	15	6	50	1.67
41456--41756	139	2.2	139	87	1	433	31	10	12	45	1.76
46846--46903	26	2.3	24	77	11	62	48	1	1	48	1.22
47099--47175	31	2.5	31	91	2	120	33	14	25	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48528--48991	46	10.7	45	68	15	217	25	17	31	25	1.97
48490--49103	129	4.7	130	85	4	801	25	17	31	25	1.97
48724--48904	43	4.2	44	75	9	131	25	18	32	23	1.97
49135--49443	64	4.7	65	72	15	224	38	12	20	29	1.89
49196--49724	36	15.4	35	73	13	304	40	13	19	27	1.88
49334--49407	31	2.5	30	84	8	89	35	9	20	35	1.85
49232--49489	133	1.9	133	93	2	448	37	12	20	30	1.89
49263--49776	173	3.0	172	86	4	657	39	13	19	27	1.89
49466--49653	101	1.9	101	86	0	268	42	15	17	25	1.88
49430--49697	137	2.0	137	90	1	421	41	15	17	25	1.89
49625--49689	21	3.4	21	64	24	61	46	15	18	20	1.84
50748--50781	15	2.3	15	94	0	59	26	26	17	29	1.98
52000--52047	2	24.0	2	91	0	78	50	4	0	45	1.21
55305--55692	146	2.7	147	78	3	426	20	22	21	35	1.96
55986--56044	3	19.3	3	82	3	73	59	0	5	35	1.20
55986--56044	15	3.9	15	88	2	82	59	0	5	35	1.20
58091--58153	30	2.1	30	93	0	108	38	4	22	34	1.75
58397--58479	23	3.6	23	75	15	89	18	26	26	28	1.98
60529--60596	31	2.2	31	89	0	100	36	14	26	22	1.93
62713--62808	41	2.3	42	96	3	178	40	17	22	18	1.91
62716--62844	20	6.3	20	72	9	100	41	18	20	19	1.91
62735--62869	41	3.3	40	80	8	121	38	20	20	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62797--62890	20	4.7	20	80	2	89	34	24	18	23	1.96
63444--63488	19	2.4	19	92	0	72	46	26	17	8	1.78
63484--63648	19	9.1	19	75	15	152	12	23	20	43	1.85
63489--63623	33	3.9	33	89	5	162	11	23	22	42	1.85
63588--63646	20	3.0	20	84	0	73	13	22	18	45	1.84
65650--65733	42	2.0	42	83	0	105	21	39	15	23	1.92
67130--67165	14	2.6	14	95	0	63	30	0	25	44	1.54
67348--67507	33	4.8	33	96	1	277	14	22	19	43	1.87
67402--67489	14	5.6	14	71	23	68	11	23	19	45	1.83
69800--69824	12	2.1	12	100	0	50	0	28	0	72	0.86
69999--70052	24	2.2	24	90	0	81	38	20	16	24	1.92
72592--72658	20	3.4	20	81	2	73	38	23	22	14	1.92
72647--72704	14	3.9	14	81	16	71	50	24	17	8	1.74
72631--72709	32	2.4	33	93	2	133	48	22	18	10	1.78
72716--72811	19	5.6	17	70	21	60	12	18	21	46	1.82
72738--72795	14	3.9	14	75	16	62	10	15	24	50	1.75
72721--72811	32	2.8	33	88	3	148	12	17	21	48	1.80
72796--72839	20	2.2	20	88	4	63	18	25	20	36	1.95
73323--73367	18	2.5	18	85	0	63	15	15	42	26	1.87
74986--75029	22	2.0	22	95	0	79	22	15	40	20	1.90
75218--75311	20	4.7	20	80	2	89	23	18	24	34	1.96
75238--75315	41	1.9	41	86	0	111	21	16	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75198--75312	20	5.7	20	78	5	88	23	17	23	35	1.95
75301--75396	41	2.3	41	96	0	138	19	23	16	39	1.92
75301--75376	21	3.7	21	75	3	82	18	25	17	39	1.91
75327--75393	20	3.3	20	79	4	89	19	22	17	40	1.92
80019--80083	33	2.0	33	87	0	94	26	12	20	41	1.87
89428--89467	20	1.9	22	85	10	57	20	0	12	67	1.22
97509--97533	10	2.5	10	100	0	50	76	0	16	8	1.02
99649--99716	27	2.6	27	90	4	113	39	16	11	32	1.84
103384--103451	27	2.6	27	95	4	122	41	16	11	30	1.84

Tables:   1

The End!