genome.fa.s1195.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001195.1 Hibiscus syriacus cultivar Beakdansim tig00002368_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95960

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3785--3842	21	2.8	21	91	0	89	12	12	13	62	1.56
13495--13553	29	2.0	29	90	6	93	25	13	16	44	1.85
24724--25054	42	7.8	42	83	2	378	32	19	22	26	1.97
24724--25054	85	3.9	85	85	2	425	32	19	22	26	1.97
24744--25054	127	2.5	126	84	5	416	32	18	22	27	1.97
29055--29573	41	12.6	41	77	3	389	35	18	18	27	1.95
29054--29448	123	3.2	122	82	2	443	35	18	18	27	1.94
29504--29586	42	2.0	42	90	4	132	28	19	18	33	1.95
30732--30770	18	2.2	18	100	0	78	48	5	10	35	1.59
51734--51764	13	2.4	13	100	0	62	64	29	0	6	1.18
63313--63420	23	4.7	23	89	0	153	38	7	19	34	1.80
63377--63600	87	2.6	87	92	1	360	42	10	12	33	1.78
63535--63594	23	2.6	23	83	0	75	40	8	18	33	1.80
63843--63889	18	2.5	19	79	3	51	57	2	0	40	1.11
63898--63942	14	3.1	14	81	15	56	42	0	2	55	1.12
63921--63993	28	2.6	28	74	6	78	49	1	1	47	1.18
63933--64015	31	2.7	31	77	20	86	50	1	1	46	1.16
64715--64801	30	2.9	31	76	21	80	49	2	0	48	1.13
64902--65532	197	3.2	196	85	4	840	38	13	15	32	1.86
65571--65627	23	2.4	23	76	2	69	38	15	8	36	1.79
65580--65821	87	2.8	86	84	3	317	36	12	7	43	1.71
71264--71335	21	3.3	21	70	14	74	56	11	9	22	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71261--71349	44	2.0	44	100	0	178	55	13	8	22	1.66
80700--80793	49	1.9	49	84	0	125	23	29	30	15	1.96
91777--91810	2	17.0	2	87	0	50	44	0	0	55	0.99
91777--91817	20	2.0	20	90	0	64	41	0	2	56	1.13
95378--95416	2	20.0	2	94	5	71	51	0	0	48	1.00
95381--95414	17	2.0	17	100	0	68	52	0	0	47	1.00
95379--95418	19	2.1	19	100	0	80	52	0	0	47	1.00

Tables:   1

The End!