genome.fa.s1196.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001196.1 Hibiscus syriacus cultivar Beakdansim tig00002369_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73408

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14056--14092	20	1.9	19	89	10	58	45	10	24	18	1.81
14953--15004	2	26.0	2	100	0	104	50	0	0	50	1.00
21050--21093	2	22.0	2	100	0	88	50	0	0	50	1.00
35832--35945	59	1.9	60	82	12	146	36	16	14	32	1.89
36272--36364	21	4.5	21	78	4	100	39	18	24	17	1.91
36272--36364	41	2.3	41	100	0	186	39	18	24	17	1.91
36291--36425	41	3.3	41	84	4	148	37	21	20	20	1.94
36353--36446	20	4.7	20	80	7	91	32	25	17	24	1.96
36634--36677	22	2.0	22	95	0	79	20	45	15	18	1.85
36883--36933	19	2.7	19	100	0	102	41	27	21	9	1.84
36959--36996	20	1.9	20	88	0	58	13	15	21	50	1.78
38315--38359	18	2.5	18	81	0	54	26	44	15	13	1.83
38832--38896	19	3.4	19	78	4	76	40	24	20	15	1.91
38886--38925	14	2.9	14	100	0	80	50	27	15	7	1.70
38959--39016	14	3.9	14	79	16	71	8	17	25	48	1.75
38954--39032	32	2.4	33	95	2	142	10	18	24	46	1.80
38973--39088	20	6.3	19	76	11	91	12	20	24	42	1.87
41062--41199	19	7.7	19	73	16	116	47	18	21	13	1.82
41077--41129	14	3.4	14	75	22	52	49	18	20	11	1.78
41062--41211	33	4.4	33	74	15	142	46	18	20	14	1.83
41230--41287	20	2.9	20	92	0	89	18	22	20	37	1.94
42345--42398	24	2.2	24	90	0	81	24	16	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44871--45001	19	7.7	19	66	23	94	42	19	22	14	1.88
44871--44997	33	3.8	33	88	4	202	42	19	22	14	1.88
44872--45004	66	2.0	66	97	0	248	41	19	22	16	1.90
45161--45197	14	2.6	14	91	0	65	45	24	0	29	1.53
46584--46650	21	3.2	21	68	4	55	19	20	35	23	1.95
46584--46706	42	2.9	41	80	7	113	22	17	36	22	1.95
48724--48813	33	2.7	33	87	1	126	40	26	22	11	1.87
48785--48893	19	5.7	19	94	2	191	46	22	20	11	1.81
48889--48931	19	2.3	19	91	0	68	9	16	27	46	1.77
49492--49539	20	2.4	20	92	0	78	25	18	29	27	1.98
49550--49642	20	4.6	20	81	4	105	17	23	18	40	1.90
49550--49642	41	2.3	41	98	0	177	17	23	18	40	1.90
49550--49656	41	2.6	41	90	0	133	18	22	19	39	1.93
50946--51107	69	2.3	70	84	4	220	48	11	8	32	1.69
51397--51631	76	3.1	75	90	2	337	43	11	13	31	1.78
51475--52164	176	3.9	176	70	12	460	41	12	13	32	1.82
51641--51881	80	3.1	78	81	8	262	40	12	13	34	1.81
51797--52087	100	2.9	100	89	1	431	39	14	13	31	1.86
52003--52197	76	2.5	77	87	4	295	40	15	14	30	1.87
52003--52239	76	3.1	76	82	6	275	40	13	13	32	1.84
52156--52352	100	2.0	100	83	3	254	41	13	10	34	1.79
52783--52849	21	3.5	20	65	23	54	37	19	10	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53090--53343	108	2.4	108	85	1	321	38	10	12	39	1.77

Tables:   1

The End!