Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001198.1 Hibiscus syriacus cultivar Beakdansim tig00002372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73958

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9944--10351
20
20.2
20
77
13
367
40
23
19
16
1.90
10020--10351
40
8.2
40
94
2
547
39
24
19
16
1.92
10447--10521
6
12.5
6
100
0
150
33
50
16
0
1.45
11021--11149
6
21.5
6
100
0
258
0
16
50
33
1.45
11252--11451
20
9.8
20
84
9
253
17
21
26
35
1.95
11249--11451
40
5.0
40
89
3
291
17
21
25
35
1.95
11245--11532
20
14.2
20
78
9
178
16
20
23
40
1.91
18877--19098
111
2.0
111
97
0
417
44
11
8
35
1.71
28854--28903
15
3.3
15
88
0
73
28
32
22
18
1.97
29127--29171
7
6.1
7
80
19
56
42
15
2
40
1.59
31021--31064
20
2.3
19
85
11
63
22
27
9
40
1.84
31027--31064
20
1.9
20
94
0
67
23
26
10
39
1.87
37517--37553
16
2.3
16
90
0
56
40
0
8
51
1.32
72103--72132
14
2.1
14
93
0
51
36
6
33
23
1.81

Tables:   1

The End!