Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000012.1 Hibiscus syriacus cultivar Beakdansim tig00000022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88030

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2358--2562
65
3.2
63
77
12
193
26
18
22
32
1.97
2351--2513
65
2.5
64
83
6
197
28
17
23
30
1.97
2524--2561
20
1.9
20
94
0
67
18
15
31
34
1.92
5181--5241
23
2.8
22
75
7
70
27
24
21
26
1.99
11113--11164
19
2.7
19
93
0
95
21
15
30
32
1.94
11151--11256
46
2.3
46
100
0
212
31
17
16
33
1.93
26805--26842
19
2.0
20
84
5
51
42
23
7
26
1.81
29294--29448
64
2.4
63
89
7
226
29
21
17
30
1.96
29294--29468
64
2.7
61
83
12
210
28
22
17
30
1.97
30619--30770
75
2.0
75
97
0
286
40
18
10
30
1.84
34061--35863
600
3.0
601
93
1
2990
35
15
16
31
1.91
35776--35844
32
2.2
32
79
12
79
53
4
11
30
1.56
40148--40187
19
2.1
19
100
0
80
42
17
0
40
1.49
42452--42489
20
1.9
20
88
0
58
13
26
36
23
1.91
50906--50991
45
1.9
45
90
0
136
25
32
11
30
1.91
51103--51207
36
2.9
36
88
1
167
45
16
6
31
1.73
56021--56088
32
2.1
31
84
10
84
44
5
5
44
1.52
56195--56233
18
2.2
18
86
9
53
23
15
0
61
1.33
57467--57498
14
2.4
13
94
5
55
9
0
0
90
0.45
61447--63195
106
16.5
106
96
0
3133
33
24
18
23
1.97
63967--64043
41
1.9
41
82
10
97
48
7
3
40
1.51
63968--64232
31
7.4
35
71
18
149
46
4
6
43
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64110--64177
32
2.1
31
84
10
84
45
4
5
44
1.48
64282--64320
18
2.2
18
86
9
53
23
15
0
61
1.33
65552--65584
14
2.5
13
95
5
57
9
0
0
90
0.44
65553--65584
11
2.8
11
95
4
55
9
0
0
90
0.45
67595--67784
44
4.4
44
82
3
208
30
17
20
31
1.96
67762--68015
116
2.2
116
97
0
481
23
24
17
34
1.96
68577--68625
20
2.5
20
89
0
80
24
20
32
22
1.98
71361--71517
59
2.6
60
79
6
174
40
7
22
29
1.80
71591--71634
22
2.0
22
82
4
54
52
15
0
31
1.44
73286--73320
13
2.7
13
90
0
52
11
2
2
82
0.88
73502--73544
23
1.9
22
90
4
68
72
4
0
23
1.04
76394--76442
16
3.1
16
75
0
53
12
12
28
46
1.77
76979--77003
12
2.1
12
100
0
50
24
0
24
52
1.48
84707--84732
7
3.7
7
100
0
52
61
0
11
26
1.30

Tables:   1

The End!