genome.fa.s120.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000120.1 Hibiscus syriacus cultivar Beakdansim tig00000217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78955

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681--1051	109	3.4	109	79	7	383	42	14	10	32	1.79
1298--1345	14	3.5	13	78	13	51	22	0	0	77	0.78
5206--5257	19	2.7	19	88	8	79	32	19	13	34	1.90
5465--5508	21	2.2	20	88	8	63	54	4	13	27	1.58
8900--8966	30	2.2	30	83	0	89	55	20	10	13	1.67
12726--12776	25	2.0	25	96	0	93	19	9	15	54	1.68
16288--16336	22	2.2	22	82	10	55	65	0	4	30	1.11
17002--17086	30	2.8	31	90	3	136	48	10	15	25	1.77
18190--18436	130	1.9	130	92	0	413	35	14	12	37	1.85
18203--18467	130	2.0	129	81	4	300	38	12	13	35	1.83
18763--18825	28	2.3	27	78	8	63	46	1	3	49	1.27
19061--19103	21	2.0	21	100	0	86	39	0	13	46	1.44
19072--19157	35	2.5	35	84	0	100	37	1	20	40	1.61
19288--19345	29	2.0	29	86	6	82	27	8	29	34	1.87
23477--23774	148	2.0	148	99	0	587	39	14	19	26	1.90
30929--31000	25	2.9	25	87	8	110	16	20	31	30	1.95
32192--32412	64	3.5	64	83	4	243	33	20	19	27	1.96
32720--32755	12	3.0	12	91	0	63	33	5	25	36	1.79
32720--32788	24	2.8	26	83	12	85	37	5	24	31	1.79
35204--35244	17	2.4	17	91	4	64	34	0	7	58	1.26
35780--35805	9	2.9	9	100	0	52	46	23	7	23	1.78
36222--36266	21	2.2	20	88	4	63	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36250--36303	24	2.2	24	83	0	72	29	1	3	64	1.21
55510--55542	13	2.5	13	86	13	50	42	0	15	42	1.46
59872--59940	36	2.0	34	91	5	111	40	20	5	33	1.76
63685--63716	12	2.7	12	100	0	64	43	9	25	21	1.82
66263--66312	26	1.9	26	84	8	66	18	14	26	42	1.87
67441--67504	20	3.0	22	69	15	55	60	1	0	37	1.06
67611--67650	2	20.5	2	94	5	73	50	0	0	50	1.00
69055--69127	3	24.3	3	94	0	101	58	6	0	34	1.24
69471--69504	17	2.0	17	100	0	68	23	23	5	47	1.73
69488--69868	124	3.2	121	82	12	427	25	20	14	38	1.91
72185--72222	18	2.1	18	95	0	67	55	5	7	31	1.51

Tables:   1

The End!