genome.fa.s1200.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001200.1 Hibiscus syriacus cultivar Beakdansim tig00002374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81998

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--113	33	3.5	33	86	4	156	25	26	34	12	1.92
26--126	33	3.1	32	84	5	123	25	25	37	10	1.89
130--185	29	1.9	29	92	0	94	21	28	37	12	1.90
214--242	14	2.1	14	100	0	58	13	37	6	41	1.72
609--691	23	3.6	23	73	12	62	33	27	22	15	1.95
1791--1842	19	2.7	19	100	0	104	21	30	17	30	1.96
1883--2023	54	2.6	54	90	0	219	22	14	28	34	1.94
4909--5151	30	8.1	30	79	5	167	53	6	6	33	1.54
4964--5012	15	3.3	15	73	21	57	59	8	2	30	1.38
4909--5151	60	4.0	59	79	4	218	53	6	6	33	1.54
4897--5151	90	2.8	90	82	4	300	52	7	6	33	1.54
5144--5188	15	3.1	15	87	3	65	53	8	0	37	1.32
5142--5188	18	2.7	18	83	3	60	53	8	0	38	1.32
9227--9264	19	2.0	20	84	5	51	36	2	23	36	1.69
14381--14436	28	2.0	28	92	0	94	30	12	14	42	1.82
14994--15067	30	2.6	26	76	19	76	66	8	2	22	1.32
27096--27566	55	8.7	54	89	3	664	27	27	14	29	1.96
27096--27566	108	4.3	108	93	2	766	27	27	14	29	1.96
27096--27566	163	2.9	163	90	4	727	27	27	14	29	1.96
38534--38576	20	2.2	20	100	0	86	18	27	27	25	1.98
53414--53458	21	2.2	21	88	4	65	53	4	4	37	1.41
53754--53957	58	3.6	57	77	8	164	49	8	16	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53754--53899	57	2.6	56	76	9	136	48	8	17	26	1.74
54186--54233	21	2.3	21	85	3	62	41	14	22	20	1.89
54243--54315	21	3.5	20	79	3	65	21	21	17	38	1.93
54305--54358	20	2.6	21	82	5	74	38	20	22	18	1.93
54895--54961	19	3.5	19	83	2	80	47	23	16	11	1.80
54971--55058	33	2.6	33	89	1	131	15	25	18	40	1.90
57227--57293	21	3.2	21	66	6	55	25	35	19	19	1.95
57175--57293	42	2.8	42	82	5	116	23	36	17	22	1.95
58651--58686	14	2.6	14	95	0	63	30	0	25	44	1.54
58835--58961	33	3.9	32	84	8	175	15	22	18	43	1.88
58828--58960	66	2.0	66	94	0	230	17	21	18	42	1.90
61312--61390	20	3.9	20	77	9	70	35	22	18	22	1.96
61613--61680	20	3.4	20	72	8	75	39	23	20	16	1.91
61712--61765	14	3.5	14	77	22	63	11	20	20	48	1.80
61694--61764	33	2.2	33	81	0	79	19	21	21	38	1.94
63713--63780	20	3.5	20	78	9	77	39	23	22	14	1.91
63769--63826	14	3.9	14	75	16	62	48	24	17	10	1.78
63753--63831	32	2.4	33	93	2	133	46	22	18	11	1.81
63838--63934	19	5.7	18	71	23	93	13	20	20	45	1.85
63862--63918	14	3.7	14	75	20	60	10	15	22	50	1.74
63843--63934	33	2.8	33	98	0	175	13	19	20	46	1.83
63919--63962	20	2.2	20	88	4	63	18	25	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63928--63973	20	2.3	20	84	0	56	17	21	23	36	1.94
65819--65877	20	3.0	20	87	0	73	42	22	18	16	1.89
66140--66183	22	2.0	22	95	0	79	18	15	45	20	1.85
66350--66484	20	6.7	20	78	7	94	25	17	23	33	1.96
66350--66487	61	2.3	61	84	0	186	24	17	23	34	1.96
67202--67273	7	9.7	7	73	16	56	69	5	2	22	1.22
67475--67531	29	2.0	29	92	0	96	15	33	29	21	1.94
67590--67645	29	1.9	29	88	0	85	12	33	30	23	1.92
67663--67715	23	2.3	23	87	9	81	11	35	24	28	1.90
67780--67837	29	2.0	29	89	0	89	22	27	36	13	1.92
79758--79814	29	2.0	29	86	6	80	33	7	26	33	1.83

Tables:   1

The End!