genome.fa.s1202.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001202.1 Hibiscus syriacus cultivar Beakdansim tig00002377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92766

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14775--14879	35	3.0	35	92	0	174	21	35	26	16	1.94
14818--14880	20	3.4	19	70	20	62	19	41	23	15	1.90
14913--14955	21	2.0	21	90	0	68	16	41	25	16	1.88
21609--21651	18	2.4	18	80	7	52	37	0	0	62	0.95
28510--28570	23	2.7	23	94	2	106	34	19	16	29	1.94
30435--30592	21	7.8	20	72	7	86	38	25	17	18	1.92
30559--30828	20	13.5	20	79	6	251	37	25	17	20	1.93
31510--31556	24	2.0	24	87	8	69	25	14	21	38	1.92
34036--34284	33	7.2	34	77	14	242	46	18	21	14	1.84
34050--34284	19	13.4	19	78	17	276	46	17	21	14	1.84
34036--34284	52	4.8	52	89	8	382	46	18	21	14	1.84
34740--34810	33	2.2	33	92	0	115	47	18	22	11	1.80
34992--35046	22	2.5	22	81	0	74	20	16	40	23	1.91
35193--35346	20	7.7	20	79	7	159	18	17	27	37	1.93
35192--35346	40	3.8	40	80	4	177	18	17	27	37	1.93
35333--35415	21	4.0	21	73	6	78	25	16	24	33	1.96
35313--35411	42	2.4	43	77	11	100	21	18	23	37	1.94
39678--39769	14	6.9	14	68	12	59	18	17	9	54	1.70
39701--39765	28	2.3	28	81	0	67	20	18	7	53	1.68
39841--39885	22	2.1	22	84	12	58	62	4	4	28	1.34
41805--41865	23	2.7	23	97	0	113	26	27	26	19	1.99
43434--43478	21	2.1	21	87	0	63	15	24	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44370--44412	17	2.6	16	78	7	50	39	25	2	32	1.69
48344--48388	21	2.1	21	83	0	54	13	26	28	31	1.94
57210--57239	13	2.2	14	94	5	53	40	0	13	46	1.43
59424--59506	22	3.8	22	78	12	89	21	24	28	25	1.99
59860--59933	13	5.7	13	96	0	121	33	21	12	32	1.90
59912--60077	85	2.0	85	83	4	210	30	19	18	31	1.95
60103--60133	2	15.5	2	100	0	62	48	0	0	51	1.00
68290--68335	19	2.4	19	100	0	92	28	26	21	23	1.99
78520--78579	21	2.9	21	79	0	66	30	20	21	28	1.98
80155--80193	17	2.2	18	90	4	62	56	2	0	41	1.13
83716--83788	20	3.7	20	75	12	69	24	17	24	32	1.97
88177--88210	17	2.0	17	88	11	52	38	2	5	52	1.41
88786--88834	21	2.3	21	100	0	98	18	34	16	30	1.93
89374--89406	16	2.1	16	100	0	66	36	18	27	18	1.94
90346--90924	288	2.0	285	95	1	1052	35	21	17	25	1.95

Tables:   1

The End!