genome.fa.s1203.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001203.1 Hibiscus syriacus cultivar Beakdansim tig00002378_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59998

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17471--17558	33	2.6	33	83	7	106	63	13	2	20	1.40
18014--18081	33	2.1	33	83	5	84	22	17	42	17	1.89
19836--19883	16	2.8	18	78	12	57	62	2	0	35	1.07
19863--19905	22	1.9	23	86	13	63	67	4	0	27	1.10
20283--20330	2	24.0	2	100	0	96	50	0	0	50	1.00
20402--20436	17	2.0	18	94	5	63	11	17	5	65	1.43
29148--29207	31	1.9	31	86	6	86	38	3	1	56	1.26
29296--29388	29	3.1	28	77	9	96	37	5	2	54	1.35
29513--29569	29	2.0	29	92	0	96	64	3	3	28	1.26
30659--30720	31	2.0	31	84	3	81	56	12	3	27	1.52
30879--30926	23	2.1	23	88	0	69	35	12	18	33	1.89
31315--31377	23	2.7	23	85	0	81	38	17	6	38	1.75
31730--31783	23	2.5	20	75	18	54	42	18	1	37	1.61
31745--31807	23	2.7	23	90	0	90	38	19	6	36	1.77
31038--31905	430	2.0	427	98	1	1684	38	12	8	39	1.74
33581--34313	184	4.0	184	98	0	1423	33	15	15	35	1.90
52218--52261	22	2.0	22	81	0	52	50	18	0	31	1.47
54136--54193	28	2.0	28	83	9	73	60	3	0	36	1.14
56638--56888	108	2.4	107	85	3	310	39	12	10	38	1.77
57614--57805	99	1.9	99	83	3	244	33	10	14	41	1.79
57768--57959	73	2.6	74	85	5	262	30	14	15	39	1.87
57895--58165	100	2.7	99	88	3	393	31	13	15	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58330--58557	72	3.1	72	84	8	255	32	13	11	42	1.80
57975--58565	245	2.4	254	82	4	711	32	13	12	41	1.81

Tables:   1

The End!