genome.fa.s1204.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001204.1 Hibiscus syriacus cultivar Beakdansim tig00002379_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80493

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1845--2000	31	5.0	31	94	1	260	19	19	23	37	1.95
3754--4294	84	6.6	81	79	6	522	29	25	19	25	1.99
3754--4294	164	3.3	161	82	5	640	29	25	19	25	1.99
3733--4296	248	2.3	246	84	5	730	29	25	19	25	1.99
4763--4810	2	24.0	2	91	0	78	47	0	2	50	1.12
4840--4958	62	1.9	62	83	8	152	47	1	6	44	1.39
4885--4926	20	2.0	20	86	4	57	47	0	4	47	1.23
4883--4927	23	2.0	22	83	8	56	48	0	4	46	1.22
4906--5068	38	4.2	39	85	5	224	47	1	7	42	1.42
4906--5068	39	4.2	39	85	3	206	47	1	7	42	1.42
4907--5056	77	1.9	77	90	2	239	48	1	7	43	1.39
5080--5126	24	2.0	24	86	0	67	44	6	6	42	1.55
5115--5178	30	2.1	31	82	8	78	50	0	3	46	1.17
5183--5212	3	10.3	3	92	7	53	30	0	0	70	0.88
6969--7058	2	45.0	2	100	0	180	50	0	0	50	1.00
9132--9168	13	2.7	14	91	8	67	24	29	29	16	1.96
9158--9190	17	1.9	17	100	0	66	12	24	45	18	1.83
9132--9168	7	5.4	7	93	6	67	24	29	29	16	1.96
15728--15782	7	8.4	7	78	15	64	21	27	32	18	1.96
15728--15782	20	2.8	21	81	13	64	21	27	32	18	1.96
15734--15782	13	3.8	13	94	2	82	20	28	34	16	1.94
15789--15858	19	3.7	19	92	0	113	25	31	25	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15789--15857	9	7.3	9	82	9	84	26	31	26	15	1.96
20241--20271	6	5.2	6	100	0	62	16	0	0	83	0.64
23746--23829	23	3.7	23	79	4	80	28	13	13	45	1.80
24364--24497	23	5.8	23	89	0	178	26	18	21	32	1.97
25851--25901	20	2.5	20	83	6	57	33	3	3	58	1.35
26277--26346	21	3.3	21	71	0	59	30	1	27	41	1.65
28042--28342	149	2.0	149	97	0	566	26	13	17	41	1.87
30767--30804	20	2.0	20	89	5	60	2	13	7	76	1.11
31311--31377	3	22.7	3	96	3	127	65	0	0	34	0.93
31513--32487	116	8.6	115	91	4	1261	30	20	13	36	1.91
33121--33226	52	2.1	50	86	11	148	35	23	15	25	1.94
33059--33356	130	2.3	130	98	0	587	36	22	13	26	1.92
33268--33668	52	7.7	52	97	0	757	37	24	14	23	1.92
47087--47145	25	2.4	24	83	11	66	3	16	5	74	1.13
47636--47693	3	19.3	3	100	0	116	65	0	0	34	0.93
52357--52423	27	2.5	26	82	4	80	47	1	1	49	1.19
60082--60197	58	2.0	58	100	0	232	20	20	22	36	1.95
61680--61784	20	5.2	20	91	0	165	37	22	19	20	1.95
63929--63978	21	2.4	21	82	0	64	18	14	30	38	1.89
64385--64482	21	4.7	22	75	13	91	26	32	20	20	1.97
64386--64482	40	2.4	41	76	10	99	25	32	20	20	1.97
65653--65688	16	2.3	16	95	4	65	27	0	22	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65917--65956	14	2.9	14	80	0	53	30	0	17	52	1.45
65866--66006	66	2.2	63	87	6	196	31	0	16	51	1.49
66471--66506	18	2.0	18	94	0	63	16	2	25	55	1.55
67458--67507	24	2.1	24	88	7	75	58	14	2	26	1.47
73061--73110	24	2.1	24	88	7	75	58	14	0	28	1.37
76143--76176	12	2.8	12	90	0	50	14	0	29	55	1.40

Tables:   1

The End!