genome.fa.s1205.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001205.1 Hibiscus syriacus cultivar Beakdansim tig00002384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122776

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5865--5903	16	2.4	16	87	8	53	53	0	2	43	1.14
8274--8300	2	13.5	2	100	0	54	51	0	0	48	1.00
9002--9040	17	2.2	18	90	4	62	53	7	5	33	1.51
10241--10317	40	1.9	40	86	0	109	25	29	20	23	1.99
10241--10330	18	4.8	18	77	10	90	25	31	22	21	1.98
10653--10709	21	2.7	22	89	8	91	21	33	19	26	1.97
10729--10782	20	2.7	20	94	0	90	20	24	24	31	1.98
10738--10776	12	3.6	12	74	25	50	17	28	23	30	1.97
10895--10955	21	2.9	21	87	4	88	37	37	9	14	1.80
12103--12150	19	2.5	20	82	3	62	52	6	12	29	1.63
12793--12820	14	2.0	14	100	0	56	28	7	7	57	1.52
12795--12828	14	2.5	14	90	4	52	32	8	5	52	1.56
13276--13315	21	1.9	21	89	0	62	32	12	7	47	1.69
13537--13638	20	4.9	21	90	3	136	23	36	19	20	1.95
13537--13746	20	10.8	20	79	9	123	23	29	20	26	1.99
13858--13897	20	1.9	22	90	10	66	42	40	5	12	1.64
18881--18920	20	2.0	20	100	0	80	30	5	25	40	1.77
22009--22092	40	2.0	43	88	8	131	36	11	15	35	1.84
28288--28326	20	1.9	21	89	5	62	43	25	17	12	1.85
28255--28916	183	3.6	182	84	3	792	45	12	14	27	1.82
29304--29348	19	2.4	19	85	3	65	44	0	17	37	1.49
29594--29632	18	2.2	18	86	9	53	46	5	7	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31344--31369	11	2.4	11	100	0	52	42	0	50	7	1.31
32828--32872	19	2.4	19	88	3	65	31	2	8	57	1.41
33220--34319	199	5.5	199	94	0	1945	41	15	15	28	1.87
33220--34312	397	2.7	398	95	1	1994	41	15	15	28	1.86
35860--35905	12	3.8	12	91	0	65	43	4	30	21	1.72
37025--37056	11	2.9	11	100	0	64	18	18	0	62	1.33
37610--38635	199	5.2	199	95	0	1772	41	15	15	28	1.87
41459--41905	182	2.5	181	91	2	691	43	14	15	27	1.85
42528--42575	23	2.1	23	92	0	78	37	16	6	39	1.74
42927--42982	24	2.5	22	85	5	67	44	10	16	28	1.80
46584--46631	21	2.2	22	96	3	89	52	8	8	31	1.61
46689--46716	14	2.0	14	100	0	56	50	0	0	50	1.00
47029--47062	14	2.4	15	90	9	54	58	5	8	26	1.51
48210--48294	3	29.0	3	77	11	61	63	0	8	28	1.23
58910--59067	21	7.8	20	72	7	86	38	25	17	18	1.92
59034--59263	20	11.5	20	85	1	237	37	24	17	20	1.94
59945--59991	24	2.0	24	87	8	69	25	14	21	38	1.92
62487--62584	19	5.4	19	84	13	143	14	22	17	45	1.84
62468--62584	53	2.2	53	98	1	227	13	23	17	44	1.85
62643--62804	33	4.8	32	74	20	150	45	17	22	14	1.84
62643--62810	19	9.6	19	75	18	168	44	17	22	15	1.86
62643--62810	52	3.2	52	94	0	291	44	17	22	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62817--62916	19	5.5	19	84	12	147	15	23	17	45	1.85
62800--62916	53	2.2	53	95	1	209	14	24	17	43	1.86
62974--63136	33	4.8	33	75	16	170	45	17	23	13	1.84
62974--63193	52	4.2	52	98	0	413	44	17	23	14	1.86
62433--63141	331	2.1	332	97	0	1348	34	20	18	26	1.96
63025--63187	33	4.8	33	75	15	170	46	17	22	14	1.84
62521--63247	331	2.2	332	91	1	1174	34	20	18	26	1.96
63200--63299	19	5.5	19	84	12	147	15	23	17	45	1.85
63183--63299	53	2.2	53	95	1	209	14	24	17	43	1.86
63406--63442	14	2.6	14	91	0	65	45	21	0	32	1.52
65422--65478	14	3.7	14	77	20	60	45	22	21	10	1.82
65403--65495	33	2.8	33	95	0	168	47	21	20	10	1.80
65366--65500	19	7.6	19	76	16	128	45	23	19	11	1.82
65496--65572	19	4.3	19	76	17	83	9	15	29	45	1.77
65616--65991	91	4.1	93	96	2	699	45	18	12	22	1.83
67691--67780	14	5.7	14	74	23	81	42	23	25	8	1.83
67683--67797	33	3.5	33	95	0	212	45	20	24	9	1.81
67690--67802	19	6.8	18	72	23	88	43	22	24	9	1.83
67814--67867	14	3.5	14	73	22	54	7	25	24	42	1.80
67798--67878	33	2.5	33	93	0	135	7	23	22	46	1.76
67854--67931	41	1.9	41	94	0	138	11	26	16	44	1.82
67855--67930	21	3.7	21	82	3	100	10	26	17	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68010--68080	33	2.2	33	89	0	106	47	16	23	11	1.79
68262--68316	22	2.5	22	75	0	65	21	16	38	23	1.93
68462--68655	20	9.6	20	82	5	221	19	19	25	35	1.95
68462--68655	60	3.2	60	83	0	253	19	19	25	35	1.95
68603--68697	20	4.7	20	76	5	93	17	17	24	40	1.91
68642--68765	21	6.0	21	70	5	99	25	16	23	33	1.96
68628--68714	41	2.1	41	97	0	165	25	17	22	34	1.96
72111--72150	12	3.6	12	80	12	50	45	2	0	52	1.14
72137--72461	22	14.7	22	87	3	438	41	0	8	50	1.35
72482--72540	31	1.9	31	92	0	100	44	6	3	45	1.47
78150--78187	2	19.0	2	89	10	60	50	2	0	47	1.15
89083--89121	19	2.1	19	95	0	69	33	5	30	30	1.79
98610--98649	21	1.9	21	89	0	62	75	7	7	10	1.20
105492--105563	38	1.9	37	91	2	117	36	11	12	40	1.79
110088--110139	27	1.9	27	84	7	70	53	15	3	26	1.59
110107--110143	17	2.1	18	90	5	58	54	18	2	24	1.57
117947--118013	22	3.0	22	100	0	134	13	17	50	17	1.77
120648--120681	18	1.9	18	88	5	52	26	5	17	50	1.69
121404--121477	35	2.1	36	89	2	114	48	22	0	28	1.51
121474--121548	34	2.2	34	85	2	96	41	0	16	42	1.47

Tables:   1

The End!