genome.fa.s1206.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001206.1 Hibiscus syriacus cultivar Beakdansim tig00002385_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142942

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1302--1341	20	2.0	20	100	0	80	55	5	5	35	1.44
1302--1351	20	2.5	20	90	6	66	58	4	8	30	1.45
7831--7869	19	2.1	19	85	0	51	33	5	5	56	1.43
7860--7936	24	3.1	25	80	12	79	15	3	2	77	1.02
7841--7937	45	2.1	46	81	5	108	19	4	3	73	1.13
7875--7959	25	3.5	24	78	12	75	16	4	4	74	1.16
18411--18518	31	3.5	31	88	0	144	22	12	14	50	1.75
19731--19842	51	2.3	47	86	6	152	50	6	5	37	1.50
22472--22511	14	2.9	14	96	0	71	5	15	5	75	1.15
22473--22534	14	4.2	14	76	11	61	1	16	3	79	0.95
27682--28026	82	4.2	82	82	4	388	31	15	20	33	1.93
27764--27985	41	5.4	40	69	16	130	29	16	20	33	1.94
27670--28008	83	4.1	82	83	4	412	30	15	20	33	1.94
28783--28932	40	3.5	40	67	22	115	25	18	19	36	1.94
28755--28934	90	2.0	90	98	0	351	26	17	21	35	1.95
38138--38163	3	8.7	3	100	0	52	65	0	0	34	0.93
41196--41240	15	2.9	15	83	3	54	48	8	2	40	1.47
41979--42142	73	2.2	73	94	0	283	31	13	6	48	1.68
42030--42149	36	3.3	36	65	11	91	29	15	5	50	1.64
42993--43060	36	1.9	35	84	3	91	39	7	10	42	1.67
44057--44126	31	2.3	31	90	5	106	45	18	20	15	1.85
48064--48182	12	9.8	13	71	14	103	35	23	20	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48100--48187	24	3.7	24	96	0	158	32	22	21	22	1.98
52040--52072	2	16.5	2	100	0	66	51	0	0	48	1.00
52286--52370	12	7.1	12	65	19	52	34	21	21	23	1.97
52282--52393	24	4.7	24	89	0	161	33	22	20	24	1.97
53531--53566	18	2.0	18	88	0	54	30	11	0	58	1.33
57910--57976	30	2.3	30	92	2	109	34	10	11	43	1.76
58352--58659	94	3.4	93	84	8	365	38	15	8	37	1.78
58492--58665	81	2.2	80	86	5	244	37	16	6	39	1.75
58646--58969	159	2.1	156	87	2	461	40	14	7	37	1.75
58897--59063	80	2.1	81	94	1	291	37	13	8	40	1.75
61022--61083	3	20.0	3	80	9	54	33	3	0	62	1.11
61023--61083	16	4.0	15	78	16	63	34	3	0	62	1.12
64989--65048	27	2.3	26	82	2	75	21	11	5	61	1.49
71760--71816	22	2.6	22	91	0	96	35	10	12	42	1.77
72574--72649	2	38.0	2	97	0	143	50	1	0	48	1.09
74375--75109	106	7.0	106	89	2	1106	22	18	26	32	1.97
75346--75711	37	10.4	36	70	15	196	39	13	19	27	1.89
75393--75657	102	2.6	102	95	0	469	38	13	20	28	1.90
76885--76929	16	2.8	17	80	9	51	0	17	8	73	1.08
76871--76962	7	12.7	7	69	17	55	2	14	6	77	1.06
76927--76968	16	2.8	16	83	16	54	2	11	4	80	0.95
80034--80070	14	2.6	15	79	12	51	78	0	5	16	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81761--82093	168	2.0	167	91	1	542	34	13	12	39	1.82
82096--82327	76	3.1	76	89	1	349	24	19	21	34	1.96
82477--83052	123	4.7	122	70	14	425	38	15	20	26	1.92
93987--94015	2	14.5	2	100	0	58	48	0	0	51	1.00
97233--97344	3	38.7	3	92	7	196	66	0	0	33	0.92
98374--98430	21	2.7	21	86	5	62	40	22	17	19	1.91
100335--100365	8	3.9	8	95	0	53	51	25	0	22	1.48
102757--102792	18	2.0	18	94	0	63	25	22	8	44	1.80
106224--106439	117	1.8	118	85	1	308	26	14	7	50	1.69
114284--114361	2	44.0	2	72	23	50	43	0	0	56	0.99
114282--114367	35	2.5	35	90	3	129	45	0	0	54	0.99
118951--119120	83	2.0	84	85	3	227	23	19	26	30	1.98
119311--119972	105	6.3	105	94	1	1101	22	18	25	32	1.97
119311--119972	211	3.1	210	92	0	1117	22	18	25	32	1.97
119328--119972	316	2.0	317	95	0	1168	22	18	26	33	1.97
119911--120015	43	2.4	43	96	0	192	20	20	24	35	1.96
119806--120120	148	2.1	148	94	1	551	22	19	24	33	1.97
119595--120331	359	2.1	359	98	0	1420	22	18	25	33	1.97
119700--120226	254	2.1	254	94	0	921	21	18	25	33	1.96
119954--120471	106	4.9	105	93	1	856	23	18	25	33	1.97
119954--120471	211	2.5	211	94	0	892	23	18	25	33	1.97
128381--128427	22	2.1	22	88	7	69	46	0	12	40	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130231--130299	30	2.3	30	80	11	72	42	0	4	53	1.20
130453--130515	23	2.7	23	92	0	99	38	20	4	36	1.74
130093--131146	430	2.5	430	98	0	2049	38	11	7	42	1.70
130883--130945	23	2.7	23	95	0	108	39	20	3	36	1.69
131366--131451	39	2.2	39	93	0	145	18	13	18	48	1.80
131709--131745	18	2.1	18	89	0	56	51	10	5	32	1.60
132173--132245	23	3.2	22	88	3	83	39	20	4	35	1.72
132183--132245	23	2.7	23	92	0	99	38	19	4	38	1.73
132591--132656	25	2.6	25	80	0	87	42	13	9	34	1.76
135122--135610	181	2.7	181	94	1	836	33	17	14	34	1.90
137149--137203	12	4.6	12	93	0	83	16	36	10	36	1.84
137127--137203	36	2.1	36	87	0	109	18	35	10	36	1.85
137115--137206	6	15.3	6	74	0	67	18	33	8	39	1.82
138658--139810	197	5.9	198	95	2	2050	31	17	15	36	1.91
138658--139810	391	2.9	395	94	2	2071	31	17	15	36	1.91
139929--139977	19	2.6	19	93	0	80	57	10	2	30	1.43
141843--141884	21	2.0	21	90	0	66	16	30	11	40	1.85
142643--142668	12	2.2	12	100	0	52	15	42	7	34	1.75

Tables:   1

The End!