Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001207.1 Hibiscus syriacus cultivar Beakdansim tig00002388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122331

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9278--9303
3
8.7
3
100
0
52
0
34
0
65
0.93
10144--10183
21
2.0
20
85
5
53
35
2
5
57
1.34
16605--16665
20
2.9
21
87
7
79
18
26
32
22
1.97
20443--20482
21
1.9
21
85
10
55
35
10
2
52
1.48
23542--23612
35
2.0
35
100
0
142
29
25
16
28
1.97
38212--38268
29
1.9
30
89
3
89
54
3
10
31
1.51
39728--39788
7
8.7
7
94
0
86
24
27
19
27
1.99
59381--59426
23
2.0
23
87
8
67
28
26
28
17
1.98
61598--61653
20
2.8
20
77
17
64
66
1
7
25
1.27
61746--61825
22
3.6
21
76
21
74
65
0
3
31
1.11
61742--61811
28
2.5
28
77
11
72
70
0
2
27
1.02
61755--61922
28
6.5
24
70
21
76
65
2
3
28
1.22
61755--61823
23
2.9
23
85
10
77
66
0
2
30
1.06
61740--61859
10
10.2
12
68
26
55
65
0
3
30
1.14
61740--61817
21
3.7
21
75
18
72
66
0
3
29
1.09
61740--61881
23
6.8
20
69
23
64
65
1
3
29
1.18
61815--61860
3
15.7
3
78
13
51
63
2
2
32
1.19
61948--61972
12
2.1
12
100
0
50
68
0
8
24
1.16
61951--62018
29
2.3
30
77
10
68
63
1
5
29
1.27
61994--62039
21
2.2
21
84
7
58
60
0
4
34
1.16
62063--62112
15
3.1
16
73
18
50
68
4
0
28
1.08
62503--62604
37
2.8
37
84
0
123
32
12
14
40
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63356--64630
106
12.0
106
92
1
2002
22
18
25
34
1.96
65594--65649
22
2.5
22
94
0
94
26
12
23
37
1.90
66263--66314
15
3.2
16
79
20
63
0
13
5
80
0.88
66263--66317
16
3.5
15
81
16
67
0
12
7
80
0.91
66263--66334
33
2.3
31
78
17
78
0
15
8
76
1.01
66263--66334
31
2.3
31
81
11
85
0
15
8
76
1.01
69622--69657
4
9.0
4
100
0
72
75
0
0
25
0.81
69784--69829
20
2.3
20
92
0
74
0
36
32
30
1.58
70644--70699
20
2.9
19
75
19
62
66
1
8
23
1.30
71567--71655
37
2.4
37
84
0
106
37
5
11
46
1.63
71834--71868
3
11.7
3
100
0
70
34
0
0
65
0.93
71908--71940
13
2.4
14
90
5
50
42
0
6
51
1.26
76877--76914
19
2.0
20
89
5
60
42
18
0
39
1.50
84023--84054
12
2.7
12
90
0
55
53
0
40
6
1.26
95100--95141
20
2.1
20
86
8
59
35
2
4
57
1.33
95525--95558
15
2.4
14
90
5
50
47
0
0
52
1.00
98711--98795
31
2.6
32
85
5
100
60
12
5
21
1.54
111323--111588
137
1.9
137
84
3
356
33
20
25
20
1.97
113952--114163
75
2.8
75
83
4
214
28
16
14
41
1.87
113994--114124
36
3.6
36
67
13
88
26
16
15
41
1.87
114003--114163
76
2.1
76
91
3
263
29
16
13
40
1.86
114168--114284
39
3.0
40
87
1
155
27
18
17
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114222--114349
66
1.9
68
87
6
188
25
21
17
35
1.95
114306--114475
21
9.2
20
64
27
74
22
21
17
38
1.93
114495--114666
66
2.6
67
80
9
210
27
19
15
37
1.91
114177--114528
36
9.8
36
80
8
301
23
20
16
38
1.92
115069--115442
91
4.1
91
88
4
529
35
17
21
26
1.95
118350--118419
29
2.3
30
80
7
79
61
1
11
25
1.38
118349--118428
29
2.7
30
75
16
76
61
2
13
22
1.44
118433--118495
25
2.6
25
80
7
67
74
1
6
17
1.10
118802--118847
2
22.5
2
95
4
83
50
0
2
47
1.13
118883--118937
21
2.6
21
80
8
58
67
0
5
27
1.12
119024--119062
2
19.5
2
83
0
51
58
0
0
41
0.98
119106--119152
22
2.1
22
92
7
78
70
0
0
29
0.88
119759--119863
37
2.8
37
89
0
156
29
13
15
41
1.85

Tables:   1

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