Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001208.1 Hibiscus syriacus cultivar Beakdansim tig00002389_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123510
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:256 original size:17 final size:18
Alignment explanation
Indices: 234--269 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
224 TTAGAAAAAC
234 TAAATTAT-AAATTTTAA
1 TAAATTATAAAATTTTAA
*
251 TAAATTCTAAAATTTTAA
1 TAAATTATAAAATTTTAA
269 T
1 T
270 TTATCAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
TAAATTATAAAATTTTAA
Found at i:10278 original size:7 final size:6
Alignment explanation
Indices: 10263--10335 Score: 51
Period size: 7 Copynumber: 11.0 Consensus size: 6
10253 ATGACACTTA
10263 AAATTT AAATTCT AAATCTT AAATATT AAATATT ATAATTT --ATTT ATAATTAT
1 AAATTT AAATT-T AAAT-TT AAAT-TT AAAT-TT A-AATTT AAATTT A-AATT-T
10316 AAATGTT AAATCTT AAATTT
1 AAAT-TT AAAT-TT AAATTT
10336 TAAACCCTGC
Statistics
Matches: 57, Mismatches: 2, Indels: 16
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.07
6 7 0.12
7 39 0.68
8 7 0.12
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (6 bp):
AAATTT
Found at i:13917 original size:19 final size:19
Alignment explanation
Indices: 13881--13921 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
13871 ATCTGTTGAA
* **
13881 ACTCCACCTGTTTTGGAGT
1 ACTCCACCTGCTGCGGAGT
13900 ACTCCACCTGCTGCGGAGT
1 ACTCCACCTGCTGCGGAGT
13919 ACT
1 ACT
13922 ACTTGTCTGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.17, C:0.32, G:0.22, T:0.29
Consensus pattern (19 bp):
ACTCCACCTGCTGCGGAGT
Found at i:19078 original size:44 final size:44
Alignment explanation
Indices: 19011--19112 Score: 134
Period size: 44 Copynumber: 2.3 Consensus size: 44
19001 ACGTCGCGCA
*
19011 TGTGACGGTGGTGCGCTAGTACTTAGCACGTAACCTGACATCTT
1 TGTGACGGTGGTGCGCTAGTACTTAGCACGTAACCTGACATCTG
* * * **
19055 TGTGATGGTGGTGCG-TTGTTACTTAGCACGTAATCTGATGTCTG
1 TGTGACGGTGGTGCGCTAG-TACTTAGCACGTAACCTGACATCTG
19099 TGTGACGGTGGTGC
1 TGTGACGGTGGTGC
19113 TAAAGTATCG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 2 0.04
44 48 0.96
ACGTcount: A:0.17, C:0.18, G:0.32, T:0.33
Consensus pattern (44 bp):
TGTGACGGTGGTGCGCTAGTACTTAGCACGTAACCTGACATCTG
Found at i:19870 original size:24 final size:23
Alignment explanation
Indices: 19836--19881 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
19826 TCTTTGATAT
19836 AATTTAATGATTTTAGAAAAAAAA
1 AATTTAATGATTTT-GAAAAAAAA
* *
19860 AATTTACTGATTTTTAAAAAAA
1 AATTTAATGATTTTGAAAAAAA
19882 GATTAATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTTAATGATTTTGAAAAAAAA
Found at i:20638 original size:44 final size:45
Alignment explanation
Indices: 20585--20669 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
20575 TTTTTTTTAA
*
20585 AAAAAATGGTAGGT-AATTTTTTATTCTATTATTTAATTTAATTT
1 AAAAAATGGTAGGTAAATTTTTTATGCTATTATTTAATTTAATTT
*
20629 AAAAAATGGTAGTTAAATTTTTTATGCTATTATTTAATTTA
1 AAAAAATGGTAGGTAAATTTTTTATGCTATTATTTAATTTA
20670 GTATATTGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 13 0.34
45 25 0.66
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (45 bp):
AAAAAATGGTAGGTAAATTTTTTATGCTATTATTTAATTTAATTT
Found at i:20693 original size:46 final size:45
Alignment explanation
Indices: 20599--20703 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
20589 AATGGTAGGT
* * * * *
20599 AATTTTTTATTCTATTATTTAATTTAATTTAAAAAATGGTAGTTA
1 AATTTTTTATGCTATTATTTAATTTAATATAAAAAATGATACTCA
* ** *
20644 AATTTTTTATGCTATTATTTAATTTAGTATATTGAAATGATTCTCA
1 AATTTTTTATGCTATTATTTAATTTAATATA-AAAAATGATACTCA
20690 AATTTTTTATGCTA
1 AATTTTTTATGCTA
20704 ATTAAGACAT
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
45 28 0.56
46 22 0.44
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53
Consensus pattern (45 bp):
AATTTTTTATGCTATTATTTAATTTAATATAAAAAATGATACTCA
Found at i:29820 original size:3 final size:3
Alignment explanation
Indices: 29807--29846 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
29797 CTAGTGTAGT
*
29807 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
29847 GTATATTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:30104 original size:33 final size:34
Alignment explanation
Indices: 30034--30104 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
30024 TTTATATTCT
* * *
30034 ATGACTAACCCATGATTTCTTTTAATACACATGG
1 ATGACTAACCCATGATGTCTTTGAATACAAATGG
* *
30068 ATGACTAGCCCATGATGT-TTTGAATACAAATTG
1 ATGACTAACCCATGATGTCTTTGAATACAAATGG
30101 ATGA
1 ATGA
30105 GTGGTCTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 16 0.50
34 16 0.50
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (34 bp):
ATGACTAACCCATGATGTCTTTGAATACAAATGG
Found at i:34367 original size:31 final size:31
Alignment explanation
Indices: 34329--34391 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
34319 TCCTTACTGC
**
34329 AGTAGAACTGTGGATAACATTAAATCAAATT
1 AGTAGAACTGCAGATAACATTAAATCAAATT
34360 AGTAGAACTGCAGATAACATTAAATCAAATT
1 AGTAGAACTGCAGATAACATTAAATCAAATT
34391 A
1 A
34392 AGGAAAAACA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.48, C:0.11, G:0.14, T:0.27
Consensus pattern (31 bp):
AGTAGAACTGCAGATAACATTAAATCAAATT
Found at i:38263 original size:20 final size:23
Alignment explanation
Indices: 38223--38263 Score: 61
Period size: 20 Copynumber: 1.9 Consensus size: 23
38213 TAGTCCTCAC
38223 ACTTCAAAATATTCTAATTAACT
1 ACTTCAAAATATTCTAATTAACT
38246 ACTT-AAAATA-TC-AATTAA
1 ACTTCAAAATATTCTAATTAA
38264 ATCATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 2 0.11
22 6 0.33
23 4 0.22
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.37
Consensus pattern (23 bp):
ACTTCAAAATATTCTAATTAACT
Found at i:39268 original size:24 final size:24
Alignment explanation
Indices: 39241--39291 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
39231 CTCATTCAAT
* *
39241 TTTAAAATATAAA-TGATATTTTAA
1 TTTAAAATA-AAATTCATATATTAA
39265 TTTAAAATAAAATTCATATATTAA
1 TTTAAAATAAAATTCATATATTAA
39289 TTT
1 TTT
39292 TAATTAGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 3 0.12
24 21 0.88
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (24 bp):
TTTAAAATAAAATTCATATATTAA
Found at i:40548 original size:18 final size:18
Alignment explanation
Indices: 40525--40565 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
40515 TCCGAAGTCG
40525 ATTAATCAAAAACAAAGT
1 ATTAATCAAAAACAAAGT
40543 ATTAATCAAAAACAAAGT
1 ATTAATCAAAAACAAAGT
40561 ATTAA
1 ATTAA
40566 GGCCGGTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.61, C:0.10, G:0.05, T:0.24
Consensus pattern (18 bp):
ATTAATCAAAAACAAAGT
Found at i:44047 original size:12 final size:12
Alignment explanation
Indices: 44030--44054 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
44020 TATTAAAATG
44030 GATAAATTGTGT
1 GATAAATTGTGT
44042 GATAAATTGTGT
1 GATAAATTGTGT
44054 G
1 G
44055 TGTGTCTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.28, T:0.40
Consensus pattern (12 bp):
GATAAATTGTGT
Found at i:45793 original size:9 final size:9
Alignment explanation
Indices: 45779--45830 Score: 61
Period size: 9 Copynumber: 5.6 Consensus size: 9
45769 ATATGCAAAA
45779 AAATAAATT
1 AAATAAATT
45788 AAATAAAATATT
1 AAAT--AA-ATT
45800 AAATAAATT
1 AAATAAATT
*
45809 AAAT-ACTT
1 AAATAAATT
45817 AAATAAATT
1 AAATAAATT
45826 AAATA
1 AAATA
45831 CAAAATATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
8 7 0.19
9 19 0.51
10 2 0.05
11 2 0.05
12 7 0.19
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (9 bp):
AAATAAATT
Found at i:45802 original size:17 final size:17
Alignment explanation
Indices: 45782--45831 Score: 75
Period size: 17 Copynumber: 2.9 Consensus size: 17
45772 TGCAAAAAAA
*
45782 TAAATTAAATAAAATA-T
1 TAAA-TAAATTAAATACT
45799 TAAATAAATTAAATACT
1 TAAATAAATTAAATACT
45816 TAAATAAATTAAATAC
1 TAAATAAATTAAATAC
45832 AAAATATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 10 0.32
17 21 0.68
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (17 bp):
TAAATAAATTAAATACT
Found at i:45805 original size:21 final size:21
Alignment explanation
Indices: 45779--45857 Score: 73
Period size: 21 Copynumber: 4.0 Consensus size: 21
45769 ATATGCAAAA
45779 AAATAAATTAAATAAAATATT
1 AAATAAATTAAATAAAATATT
*
45800 AAATAAATTAAAT---A-CTT
1 AAATAAATTAAATAAAATATT
45817 AAATAAATTAAATACAAAATATT
1 AAATAAATTAAAT--AAAATATT
45840 -AA-AAA-TATAATAAAATAT
1 AAATAAATTA-AATAAAATAT
45858 ACCTTAGACA
Statistics
Matches: 49, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
17 15 0.31
18 1 0.02
19 7 0.14
20 2 0.04
21 19 0.39
22 3 0.06
23 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (21 bp):
AAATAAATTAAATAAAATATT
Found at i:47409 original size:13 final size:14
Alignment explanation
Indices: 47380--47409 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
47370 AAAAAATCAA
47380 AATCAAATTAGACT
1 AATCAAATTAGACT
47394 AATCAAATTA-ACT
1 AATCAAATTAGACT
47407 AAT
1 AAT
47410 TATTTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.53, C:0.13, G:0.03, T:0.30
Consensus pattern (14 bp):
AATCAAATTAGACT
Found at i:49237 original size:2 final size:2
Alignment explanation
Indices: 49230--49267 Score: 60
Period size: 2 Copynumber: 19.0 Consensus size: 2
49220 ACAAGGAATC
49230 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AGT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
49268 GAACGATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 31 0.91
3 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:55476 original size:176 final size:177
Alignment explanation
Indices: 55166--55512 Score: 411
Period size: 176 Copynumber: 2.0 Consensus size: 177
55156 AAAACAAAAC
* * *
55166 AAAAAAAATCTAATACGATCAGGAAAACTATTAAAATTTTGACATAAATATTGGATAACGTTTAA
1 AAAAAAAATCAAATACGATCAGGAAAAC-ATTAAAATTTTGACATAAATATTGGATAACATTCAA
* *
55231 AATTCAAAAAATTAAAACAAATCAAAATAAACCTTCTTCAAACCGAATCCAAAGAAACGGCCGAT
65 AATTCAAAAAATCAAAACAAATCAAAATAAACCTTCTTCAAACCGAATCCAAAGAAAAGGCCGAT
* *
55296 TAATCGTCAAAGGAATA-CAAGATTTAAGATAAAATCAAAACGCATGCA
130 TAATCGTAAAACGAA-AGCAAGATTTAAGATAAAATCAAAACGCATGCA
* * *
55344 AAAAAAAATCAAATACGATCAGGGAAAA-A-TAATATTTTGACATATATATTGGATCAATATTCA
1 AAAAAAAATCAAATACGATCA-GGAAAACATTAAAATTTTGACATAAATATTGGAT-AACATTCA
** * **
55407 AAATTCGGAAAATCAAAGCAAAGT-AAAATCAAA-CTTCTTCGCACC-AATTCCAAA-AAAAGGC
64 AAATTCAAAAAATCAAAACAAA-TCAAAAT-AAACCTTCTTCAAACCGAA-TCCAAAGAAAAGGC
* * * *
55468 CTATTAATCGTAAAACGAAAGCAATATTTTAGATAAAATTAAAAC
126 CGATTAATCGTAAAACGAAAGCAAGATTTAAGATAAAATCAAAAC
55513 AAATTTTACC
Statistics
Matches: 144, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
175 1 0.01
176 68 0.47
177 45 0.31
178 24 0.17
179 6 0.04
ACGTcount: A:0.51, C:0.15, G:0.11, T:0.24
Consensus pattern (177 bp):
AAAAAAAATCAAATACGATCAGGAAAACATTAAAATTTTGACATAAATATTGGATAACATTCAAA
ATTCAAAAAATCAAAACAAATCAAAATAAACCTTCTTCAAACCGAATCCAAAGAAAAGGCCGATT
AATCGTAAAACGAAAGCAAGATTTAAGATAAAATCAAAACGCATGCA
Found at i:69873 original size:51 final size:50
Alignment explanation
Indices: 69781--69884 Score: 122
Period size: 51 Copynumber: 2.0 Consensus size: 50
69771 CACTTGTTCA
* *
69781 TCTTCAACAATCTCCCTTTCATTAATCTCTTTTGCAACTTCAAATGTTTCT
1 TCTTCAACAATCTCCCTTTCATT-ATCTCTTCTGCAACTTCAAATGTTGCT
* *
69832 TCTTCAACTATCTCCCTTTCATT-T-TCTTCTGCAATATCTTCACATGTTGCT
1 TCTTCAACAATCTCCCTTTCATTATCTCTTCTGC-A-A-CTTCAAATGTTGCT
69883 TC
1 TC
69885 CTCCAGAGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
48 7 0.15
49 2 0.04
50 1 0.02
51 36 0.78
ACGTcount: A:0.20, C:0.29, G:0.05, T:0.46
Consensus pattern (50 bp):
TCTTCAACAATCTCCCTTTCATTATCTCTTCTGCAACTTCAAATGTTGCT
Found at i:70085 original size:147 final size:147
Alignment explanation
Indices: 69882--70166 Score: 455
Period size: 147 Copynumber: 1.9 Consensus size: 147
69872 CACATGTTGC
* *
69882 TTCCTCCAGAGATTCGAACTCGCATGTAGTCACTTCCTTCACTTCCAAAAACCCTTTTTCTTCTT
1 TTCCTCCAAAGATTCGAACTCGCATGTAATCACTTCCTTCACTTCCAAAAACCCTTTTTCTTCTT
* *
69947 TACAATCCATCCTTTTAGCTTCATCCAACACCGAGACTGCCCTAACCCGGCCCCAACTCCGTTCG
66 CACAATCCATCCTTTTAGCTTCATCCAACACCGAGACTGCCCTAACCCGGCCACAACTCCGTTCG
70012 ATGTATTCATCGATGCA
131 ATGTATTCATCGATGCA
* *
70029 TTCCTCCAAAGATTCGGACTCGCATGTAATCACTT-CTTCCACTTCCAACAACCCTTTTTCTTCT
1 TTCCTCCAAAGATTCGAACTCGCATGTAATCACTTCCTT-CACTTCCAAAAACCCTTTTTCTTCT
* * * * *
70093 TCACAATCCATCCTTTTAGCTTCATTCAACACCGAGACTGCCCTAATCTGGCCACGACTCCGTTT
65 TCACAATCCATCCTTTTAGCTTCATCCAACACCGAGACTGCCCTAACCCGGCCACAACTCCGTTC
70158 GATGTATTC
130 GATGTATTC
70167 TTTGTAGAGA
Statistics
Matches: 126, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
146 3 0.02
147 123 0.98
ACGTcount: A:0.23, C:0.34, G:0.11, T:0.32
Consensus pattern (147 bp):
TTCCTCCAAAGATTCGAACTCGCATGTAATCACTTCCTTCACTTCCAAAAACCCTTTTTCTTCTT
CACAATCCATCCTTTTAGCTTCATCCAACACCGAGACTGCCCTAACCCGGCCACAACTCCGTTCG
ATGTATTCATCGATGCA
Found at i:73838 original size:6 final size:6
Alignment explanation
Indices: 73827--73853 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
73817 CGACGATATC
73827 GACCCT GACCCT GACCCT GACCCT GAC
1 GACCCT GACCCT GACCCT GACCCT GAC
73854 TCTAATCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.48, G:0.19, T:0.15
Consensus pattern (6 bp):
GACCCT
Found at i:89854 original size:81 final size:81
Alignment explanation
Indices: 89726--89881 Score: 201
Period size: 81 Copynumber: 1.9 Consensus size: 81
89716 ATAAAAAAAA
* * *
89726 TCACAAATTACTTAAAGGAAACACAGGAAGAGCAAAAGGGTATCAAAA-TTG-TTTCCTCTCATG
1 TCACAAATTACTCAAA-GAAACACAGCAAGAGCAAAAGGGTACCAAAATTTGTTTTCCTCT--TG
89789 CAAATTCCCAGAAATTTTT
63 CAAATTCCCAGAAATTTTT
* * *
89808 TCACAAATTACTCAACA-AAACACAGCTAGAGCTAAAGGGTGCCAAAATTTGTTTTCCTCTTGCA
1 TCACAAATTACTCAA-AGAAACACAGCAAGAGCAAAAGGGTACCAAAATTTGTTTTCCTCTTGCA
89872 AATTCCCAGA
65 AATTCCCAGA
89882 TATATAGCAA
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
81 39 0.60
82 17 0.26
83 9 0.14
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26
Consensus pattern (81 bp):
TCACAAATTACTCAAAGAAACACAGCAAGAGCAAAAGGGTACCAAAATTTGTTTTCCTCTTGCAA
ATTCCCAGAAATTTTT
Found at i:90092 original size:82 final size:80
Alignment explanation
Indices: 89887--90103 Score: 258
Period size: 82 Copynumber: 2.7 Consensus size: 80
89877 CCAGATATAT
* * * *
89887 AGCAAGAGCAAAAGAGTATCAAAATTTGTTTTCCCTCATGCAAATTCCCAAAAAAAACAAAAAAT
1 AGCAAGAGCAAAAGGGTATCAAAATTCGTTTTCCCACATGCAAATTCCCAGAAAAAACAAAAAAT
*
89952 TACTGAAGGAAATAC
66 TACTGAAAGAAATAC
* * * * * * * *
89967 AGCAAGACCAAAAGGGTTCATCACAA-CCGTTTTCCTACA-GCAAAATCCCAGAAAGAACTTCAC
1 AGCAAGAGCAAAAGGG-T-ATCAAAATTCGTTTTCCCACATGCAAATTCCCAGAAAAAAC--AAA
90030 AAATTACTGAAAGAAATAC
62 AAATTACTGAAAGAAATAC
*
90049 AGCAAGAGCAAAAGGGTATCAAAATTCGTTTCCCCACATGCAAATTCCCAGAAAA
1 AGCAAGAGCAAAAGGGTATCAAAATTCGTTTTCCCACATGCAAATTCCCAGAAAA
90104 CAAAATTACA
Statistics
Matches: 111, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
80 36 0.32
81 21 0.19
82 54 0.49
ACGTcount: A:0.45, C:0.22, G:0.14, T:0.19
Consensus pattern (80 bp):
AGCAAGAGCAAAAGGGTATCAAAATTCGTTTTCCCACATGCAAATTCCCAGAAAAAACAAAAAAT
TACTGAAAGAAATAC
Found at i:91046 original size:37 final size:37
Alignment explanation
Indices: 90918--91048 Score: 153
Period size: 37 Copynumber: 3.6 Consensus size: 37
90908 ATTTTTCGTC
* *
90918 CTACTATGATTTAAACTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
90955 -T--TAGGATTCAAACTCCTAAAAATAGGATA-ACATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGA-ATT
* * *
90989 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
91026 CTACTAAGATTTAAATTCCTAAA
1 CTACTAGGATTCAAACTCCTAAA
91049 GATATGATCC
Statistics
Matches: 81, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
33 1 0.01
34 29 0.36
35 1 0.01
36 1 0.01
37 48 0.59
38 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:91355 original size:22 final size:20
Alignment explanation
Indices: 91325--91383 Score: 59
Period size: 22 Copynumber: 2.9 Consensus size: 20
91315 CTTTTCTTTT
91325 TTTTCATGTAATATTTTTTTAC
1 TTTT-ATGT-ATATTTTTTTAC
*
91347 ATTTTATGTATTTTCTTTTTAC
1 -TTTTATGTATATT-TTTTTAC
91369 -TTTA-GTATATTTTTT
1 TTTTATGTATATTTTTT
91384 ATTTTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
18 4 0.12
19 6 0.18
20 4 0.12
21 4 0.12
22 11 0.33
23 4 0.12
ACGTcount: A:0.20, C:0.07, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTATGTATATTTTTTTAC
Found at i:91472 original size:8 final size:8
Alignment explanation
Indices: 91461--91591 Score: 50
Period size: 9 Copynumber: 15.0 Consensus size: 8
91451 TATATTTACT
91461 TTTTTTTA
1 TTTTTTTA
91469 TTTTTTTA
1 TTTTTTTA
91477 TTTTATATATATA
1 -TTT-T-T-T-TA
91490 TTATTTTTA
1 TT-TTTTTA
*
91499 CTTTTTTA
1 TTTTTTTA
*
91507 --TTATTA
1 TTTTTTTA
*
91513 TTTCATTTA
1 TTT-TTTTA
91522 TTTGTTTTA
1 TTT-TTTTA
* *
91531 TTTCTATA
1 TTTTTTTA
*
91539 TTTTTTTCC
1 TTTTTTT-A
**
91548 TTTTTTCC
1 TTTTTTTA
*
91556 TTTTTTTCT
1 TTTTTTT-A
91565 TTTTCTTTA
1 TTTT-TTTA
91574 TTTTTTATA
1 TTTTTT-TA
91583 TTTATTTTA
1 TTT-TTTTA
91592 CTTACTATTT
Statistics
Matches: 94, Mismatches: 15, Indels: 27
0.69 0.11 0.20
Matches are distributed among these distances:
6 5 0.05
8 32 0.34
9 40 0.43
10 8 0.09
11 2 0.02
12 4 0.04
13 3 0.03
ACGTcount: A:0.17, C:0.07, G:0.01, T:0.76
Consensus pattern (8 bp):
TTTTTTTA
Found at i:91482 original size:41 final size:42
Alignment explanation
Indices: 91397--91520 Score: 139
Period size: 41 Copynumber: 3.0 Consensus size: 42
91387 TTTTTTAGAT
* *
91397 TATATATAAATATA-TTA-TTTTTTATTATCAGTTTTATTAATTTA
1 TATATATATATATATTTACTTTTTTATTAT---TTTT-TTATTTTA
91441 TATATATATATATATTTACTTTTTT-TTATTTTTTTATTTTA
1 TATATATATATATATTTACTTTTTTATTATTTTTTTATTTTA
* * *
91482 TATATATAT-TATTTTTACTTTTTTATTATTATTTCATTT
1 TATATATATATATATTTACTTTTTTATTATTTTTTTATTT
91521 ATTTGTTTTA
Statistics
Matches: 72, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
40 14 0.19
41 28 0.39
42 4 0.06
44 13 0.18
45 7 0.10
46 6 0.08
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (42 bp):
TATATATATATATATTTACTTTTTTATTATTTTTTTATTTTA
Found at i:91511 original size:33 final size:35
Alignment explanation
Indices: 91445--91511 Score: 86
Period size: 33 Copynumber: 2.0 Consensus size: 35
91435 AATTTATATA
* *
91445 TATATATATATTTACTTTTTTTTATTTTTTTATTT
1 TATATATATATTTACTTTTTCTTATTTTATTATTT
91480 TATATATATA-TTA-TTTTTACTT-TTTTATTATT
1 TATATATATATTTACTTTTT-CTTATTTTATTATT
91512 ATTTCATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 14 0.48
34 5 0.17
35 10 0.34
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (35 bp):
TATATATATATTTACTTTTTCTTATTTTATTATTT
Found at i:91524 original size:29 final size:30
Alignment explanation
Indices: 91449--91513 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
91439 TATATATATA
* * *
91449 TATATATTTACTTTTTTTTATTTTTTTATTT
1 TATATATATA-TTATTTTTACTTTTTTATTT
91480 TATATATATATTATTTTTACTTTTTTATTAT
1 TATATATATATTATTTTTACTTTTTTATT-T
91511 TAT
1 TAT
91514 TTCATTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (30 bp):
TATATATATATTATTTTTACTTTTTTATTT
Found at i:91696 original size:15 final size:15
Alignment explanation
Indices: 91678--91707 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91668 TATTTATTTC
91678 TTACATTTTTATCTA
1 TTACATTTTTATCTA
*
91693 TTACCTTTTTATCTA
1 TTACATTTTTATCTA
91708 ACATGATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (15 bp):
TTACATTTTTATCTA
Found at i:93635 original size:18 final size:18
Alignment explanation
Indices: 93612--93651 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
93602 TTCCTTCAAG
93612 TCTGGATTCACATCCACT
1 TCTGGATTCACATCCACT
93630 TCTGGATTCACATCCACT
1 TCTGGATTCACATCCACT
93648 TCTG
1 TCTG
93652 AAAGACTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (18 bp):
TCTGGATTCACATCCACT
Found at i:94185 original size:8 final size:8
Alignment explanation
Indices: 94172--94210 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
94162 GAACATTTCG
*
94172 TGCATTCT
1 TGCATTTT
94180 TGCA-TTT
1 TGCATTTT
94187 TGCATTTT
1 TGCATTTT
*
94195 TGCCTTTT
1 TGCATTTT
94203 TGCATTTT
1 TGCATTTT
94211 CATCTACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.59
Consensus pattern (8 bp):
TGCATTTT
Found at i:95389 original size:16 final size:16
Alignment explanation
Indices: 95363--95444 Score: 57
Period size: 16 Copynumber: 5.1 Consensus size: 16
95353 AGATCCAATC
95363 AAGAACAAAAAAG-AA
1 AAGAACAAAAAAGCAA
95378 AAGAAGCAAAAAAGCAA
1 AAGAA-CAAAAAAGCAA
* *
95395 AA-AAAAAACAAAGAAA
1 AAGAACAAA-AAAGCAA
95411 AAGAGA-AACAATAA-CAA
1 AAGA-ACAA-AA-AAGCAA
*
95428 AAGGA-AAAAAAGCAA
1 AAGAACAAAAAAGCAA
95443 AA
1 AA
95445 ATCAAAAAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 16
0.73 0.05 0.21
Matches are distributed among these distances:
14 2 0.04
15 15 0.27
16 21 0.38
17 13 0.24
18 4 0.07
ACGTcount: A:0.77, C:0.09, G:0.13, T:0.01
Consensus pattern (16 bp):
AAGAACAAAAAAGCAA
Found at i:95426 original size:22 final size:23
Alignment explanation
Indices: 95401--95468 Score: 61
Period size: 23 Copynumber: 2.9 Consensus size: 23
95391 GCAAAAAAAA
95401 AACAAAGAAAAAGAG-AAACAAT-
1 AACAAAGAAAAAGAGCAAA-AATC
*
95423 AACAAAAGGAAAAAAAGCAAAAATC
1 AAC-AAA-GAAAAAGAGCAAAAATC
*
95448 AA-AAAGAAAAAGGGACAAAAA
1 AACAAAGAAAAAGAG-CAAAAA
95469 GCACATGCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
22 10 0.26
23 12 0.32
24 11 0.29
25 5 0.13
ACGTcount: A:0.74, C:0.09, G:0.15, T:0.03
Consensus pattern (23 bp):
AACAAAGAAAAAGAGCAAAAATC
Found at i:96124 original size:22 final size:22
Alignment explanation
Indices: 96096--96146 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
96086 CCCCATCAAT
96096 CCTTTGAGCATCAAATACCAAA
1 CCTTTGAGCATCAAATACCAAA
*
96118 CCTTTGAGCATCAAATGCCAAA
1 CCTTTGAGCATCAAATACCAAA
96140 CCTTTGA
1 CCTTTGA
96147 CCAAACACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.25
Consensus pattern (22 bp):
CCTTTGAGCATCAAATACCAAA
Found at i:97038 original size:36 final size:36
Alignment explanation
Indices: 96991--97270 Score: 290
Period size: 36 Copynumber: 7.9 Consensus size: 36
96981 GTGCTCACCA
96991 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATT
*
97027 TTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATT
* * * *
97063 TCGTCTATCTAGAGACAGTTTCCCTTGAAATAAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATT
* *
97099 GTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAA--
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATT
* * * * *
97133 ----ATAT-TTGA-ATATGTTTTCTTTGAAACAAATT
1 TTGTCTCTCTTGAGACA-GTTTCCCTTGAAACAAATT
* * ** * *
97164 TCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAATT
*
97201 TTGTCTCTCTTGAGACAGTTTCTCTTGAAAC-AATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATT
*
97236 TTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAA
1 TT-GTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
97271 ACCTTTGAAT
Statistics
Matches: 199, Mismatches: 33, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
28 2 0.01
29 18 0.09
30 2 0.01
35 6 0.03
36 136 0.68
37 35 0.18
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (36 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATT
Found at i:97232 original size:102 final size:102
Alignment explanation
Indices: 97045--97233 Score: 272
Period size: 102 Copynumber: 1.9 Consensus size: 102
97035 CTTGAGACAG
*
97045 TTTCTCTTGAAACAAATTTCGTCTATCTAGAGACAGTTTCCCTTGAAATAAATTGTGTCTCTCTT
1 TTTCTCTTGAAACAAATTTCGTCTACCTAGAGACAGTTTCCCTTGAAATAAATTGTGTCTCTCTT
97110 GAGACAGTTTCCCTTAAAACAAAATATTTGAATATGT
66 GAGACAGTTTCCCTTAAAACAAAATATTTGAATATGT
* * ** * * *
97147 TTTCT-TTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCTCTTGAAACAAATTTCGTCTACCTAGAGACAGTTTCCCTT-GAAATAAATTGTGTCTCTCT
* *
97211 TGAGACAGTTTCTCTTGAAACAA
65 TGAGACAGTTTCCCTTAAAACAA
97234 TTTTCGTCTA
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
101 33 0.43
102 43 0.57
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (102 bp):
TTTCTCTTGAAACAAATTTCGTCTACCTAGAGACAGTTTCCCTTGAAATAAATTGTGTCTCTCTT
GAGACAGTTTCCCTTAAAACAAAATATTTGAATATGT
Found at i:97262 original size:138 final size:137
Alignment explanation
Indices: 97009--97333 Score: 409
Period size: 138 Copynumber: 2.4 Consensus size: 137
96999 CTTGAGACAG
*
97009 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTA
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTA
* *
97074 GAGACAGTTTCCCTTGAAATAAATTGTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAAATATTT
66 GAGACAGTTTCCCTTGAAATAAATTGTGTCTATCTTGAGACAGTTTCCCTTAAAACAAAACATTT
*
97139 GAATATG
131 GAATATA
* * * * * * * *
97146 TTTTCTTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC-AAATTTCGTCTATCT
* * * * * *
97211 TGAGACAGTTTCTCTTGAAA-CAATTTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAAACCT
65 AGAGACAGTTTCCCTTGAAATAAATTGT-GTCTATCTTGAGACAGTTTCCCTTAAAACAAAACAT
*
97275 TTGAATTTA
129 TTGAATATA
* * * * *
97284 TTTCCCCTAAAACAAATTTTGTCTCCTTTGAGACAGTTACTCTCGAAACA
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
97334 CAAAATCTTC
Statistics
Matches: 157, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
137 49 0.31
138 108 0.69
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (137 bp):
TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTA
GAGACAGTTTCCCTTGAAATAAATTGTGTCTATCTTGAGACAGTTTCCCTTAAAACAAAACATTT
GAATATA
Found at i:98230 original size:105 final size:105
Alignment explanation
Indices: 98006--99086 Score: 1643
Period size: 105 Copynumber: 10.3 Consensus size: 105
97996 GCCATCTGCG
* * * * *
98006 ATTTCAACTCCACGAA-GAAGGATATCGTGGCACTCGAGGCAACACAAGTTCAACTTCACAACGA
1 ATTTCAACTTCAC-AACGAAGGATAT--TGG-ACTCCAGACAACGCAAGTTCAACTTCACGACGA
* * *
98070 AGGGACGGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCCA
62 AGGGACCGCTGCTTGTCAAC-AACAACTTCTCAATTTCAGAGCCA
98115 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
98180 ACCGCTGCCTGTCAACAACAACTTCTCAATTTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
* * * * *
98220 ATTTCAACTTCACAATGAAGGATATTAGACTTCAGACAACGCAAGTTCAACTTCAAGATGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
98285 ACCGCTGCCTGTCAACAACAACTTCTCAATTTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
* * *
98325 ATTTCAATTTTACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
98390 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
* *
98430 ATTTCAACTTCACAATGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * *
98495 ACTGCTGCTTGTCAACAGCGACTTCTCAATTTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
98535 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
98600 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
* *
98640 ATTTCAACTTCACAACGAATGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * *
98705 ACCGCTGCTTGTCAATAACAACTTCCCAATCTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
*
98745 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * *
98810 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAAAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
98850 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
**
98915 ACCGCTGCTTGTCAACAA-AA-TT-TC-A-TTCAGATTCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
* * * *
98950 ATTTCAACTTCATAACGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * * * ** *
99015 ACGGCTGGTTGTCAACAAACAATTTCCCGGTTCCAGAGCCA
66 ACCGCTGCTTGTCAAC-AACAACTTCTCAATTTCAGAGCCA
* *
99056 ATTTCAACTTCACGACGGAGGATATTGGACT
1 ATTTCAACTTCACAACGAAGGATATTGGACT
99087 TGGAACAATG
Statistics
Matches: 899, Mismatches: 66, Indels: 17
0.92 0.07 0.02
Matches are distributed among these distances:
100 81 0.09
101 3 0.00
102 3 0.00
103 4 0.00
104 3 0.00
105 698 0.78
106 81 0.09
107 3 0.00
108 2 0.00
109 21 0.02
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (105 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
Found at i:99678 original size:34 final size:37
Alignment explanation
Indices: 99634--99735 Score: 158
Period size: 34 Copynumber: 2.8 Consensus size: 37
99624 TTTCGTCCTA
*
99634 CTAGGATTCAAACTCCTAAAAATAGAATAGA-A-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGACATTTT
99669 -TAGGATTCAAACTCCTAAAAATAGGATA-ACATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGACATTTT
99704 GCTAGGATTCAAACTCCTAAAAATAGGATAGA
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGA
99736 GTTCTACTAA
Statistics
Matches: 61, Mismatches: 1, Indels: 7
0.88 0.01 0.10
Matches are distributed among these distances:
33 1 0.02
34 28 0.46
35 3 0.05
37 28 0.46
38 1 0.02
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.27
Consensus pattern (37 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGACATTTT
Found at i:99719 original size:37 final size:35
Alignment explanation
Indices: 99634--99769 Score: 159
Period size: 37 Copynumber: 3.8 Consensus size: 35
99624 TTTCGTCCTA
*
99634 CTAGGATTCAAACTCCTAAAAATAGAATAGAATTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTT
99669 -TAGGATTCAAACTCCTAAAAATAGGATA-ACATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGA-A-TTT
*
99704 GCTAGGATTCAAACTCCTAAAAATAGGATAGAGTTCT
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGAATT-T
* * * *
99741 ACTAAGATTTAAATTCCTAAAGATAGGAT
1 -CTAGGATTCAAACTCCTAAAAATAGGAT
99770 CCACCACTAT
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
33 1 0.01
34 28 0.32
35 3 0.03
36 2 0.02
37 53 0.60
38 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (35 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGAATTT
Found at i:100068 original size:24 final size:23
Alignment explanation
Indices: 100036--100103 Score: 63
Period size: 23 Copynumber: 2.9 Consensus size: 23
100026 TTTTCTTTTT
100036 TTTTCATGTAATATTTTTTTTTAC
1 TTTT-ATGTAATATTTTTTTTTAC
100060 ATTTTATGT-AT-TTTCTTTTTTAC
1 -TTTTATGTAATATTT-TTTTTTAC
100083 -TTTA-GTATATATTTTTATTTT
1 TTTTATGTA-ATATTTTT-TTTT
100104 TTTTAGATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
20 2 0.05
21 4 0.11
22 7 0.18
23 17 0.45
24 4 0.11
25 4 0.11
ACGTcount: A:0.21, C:0.06, G:0.04, T:0.69
Consensus pattern (23 bp):
TTTTATGTAATATTTTTTTTTAC
Found at i:100170 original size:43 final size:39
Alignment explanation
Indices: 100088--100225 Score: 130
Period size: 38 Copynumber: 3.6 Consensus size: 39
100078 TTTACTTTAG
100088 TATA-TATTTTTA-TTTTTT-TTAGA-TTATATATA-A-A
1 TATATTATTTTTACTTTTTTATTA-ATTTATATATATATA
*
100122 TATATTATTTTTATTATCAGTTTTATTAATTTATATATATATA
1 TATATTATTTTTACT-T---TTTTATTAATTTATATATATATA
* ** *
100165 TATATT-TATTTACTTTTTTATTTTTTTAT-TTTATATA
1 TATATTATTTTTACTTTTTTATTAATTTATATATATATA
100202 TATATTATTTTTACTTTTTTATTA
1 TATATTATTTTTACTTTTTTATTA
100226 TTATTTTATT
Statistics
Matches: 86, Mismatches: 7, Indels: 18
0.77 0.06 0.16
Matches are distributed among these distances:
34 4 0.05
35 8 0.09
36 1 0.01
37 14 0.16
38 27 0.31
40 5 0.06
41 13 0.15
42 7 0.08
43 7 0.08
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.66
Consensus pattern (39 bp):
TATATTATTTTTACTTTTTTATTAATTTATATATATATA
Found at i:100192 original size:16 final size:15
Alignment explanation
Indices: 100167--100302 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 15
100157 TATATATATA
100167 TATTTATTTACTTTTT
1 TATTTATTTA-TTTTT
* *
100183 TATTTTTTTATTTTA
1 TATTTATTTATTTTT
*
100198 TATATATATTA-TTTT
1 TATTTAT-TTATTTTT
*
100213 TACTTT-TTTA-TTAT
1 TA-TTTATTTATTTTT
100227 TATTTTATTTATTTGTTT
1 TA-TTTATTTA-TT-TTT
* *
100245 TATTTCTATATTTTT
1 TATTTATTTATTTTT
100260 T-TCTATATTT-TTTTT
1 TAT-T-TATTTATTTTT
* *
100275 CTTTTTCTTTATTTTT
1 -TATTTATTTATTTTT
100291 TA--TATTTATTTT
1 TATTTATTTATTTT
100303 ACTTACTATT
Statistics
Matches: 93, Mismatches: 16, Indels: 25
0.69 0.12 0.19
Matches are distributed among these distances:
13 9 0.10
14 12 0.13
15 34 0.37
16 26 0.28
17 8 0.09
18 4 0.04
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (15 bp):
TATTTATTTATTTTT
Found at i:100209 original size:24 final size:24
Alignment explanation
Indices: 100182--100270 Score: 69
Period size: 25 Copynumber: 3.7 Consensus size: 24
100172 ATTTACTTTT
100182 TTATTTTT-TTATTTTATATATATA
1 TTATTTTTCTTATTTTAT-TATATA
*
100206 TTATTTTTACTT-TTTTATTATTATT
1 TTATTTTT-CTTATTTTATTA-TATA
* * *
100231 TTATTTAT-TTGTTTTATTTCTATA
1 TTATTTTTCTTATTTTA-TTATATA
100255 TT-TTTTTCTATATTTT
1 TTATTTTTCT-TATTTT
100271 TTTTCTTTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
23 6 0.12
24 21 0.40
25 23 0.44
26 2 0.04
ACGTcount: A:0.21, C:0.03, G:0.01, T:0.74
Consensus pattern (24 bp):
TTATTTTTCTTATTTTATTATATA
Found at i:100213 original size:30 final size:29
Alignment explanation
Indices: 100179--100302 Score: 92
Period size: 29 Copynumber: 4.1 Consensus size: 29
100169 TTTATTTACT
*
100179 TTTTTATTTTTTTATTTTATATATATATTA
1 TTTTTATTTTTTTATTTT-TTTATATATTA
* *
100209 TTTTTACTTTTTTATTATTATTTTATTTATT-
1 TTTTTA--TTTTT-TTATTTTTTTATATATTA
* * * *
100240 TGTTTTATTTCTATATTTTTTTCTATATTT
1 T-TTTTATTTTTTTATTTTTTTATATATTA
*
100270 TTTTTCTTTTTCTT-TATTTTTTATAT-TTA
1 TTTTTATTTTT-TTAT-TTTTTTATATATTA
100299 TTTT
1 TTTT
100303 ACTTACTATT
Statistics
Matches: 74, Mismatches: 13, Indels: 15
0.73 0.13 0.15
Matches are distributed among these distances:
29 28 0.38
30 21 0.28
31 1 0.01
32 18 0.24
33 6 0.08
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.77
Consensus pattern (29 bp):
TTTTTATTTTTTTATTTTTTTATATATTA
Found at i:100221 original size:25 final size:24
Alignment explanation
Indices: 100193--100261 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 24
100183 TATTTTTTTA
100193 TTTTATATATATATTATTTTTACTT-
1 TTTTAT-TATATATT-TTTTTACTTG
*
100218 TTTTATTAT-TATTTTATTTATTTG
1 TTTTATTATATATTTT-TTTACTTG
*
100242 TTTTATTTCTATATTTTTTT
1 TTTTA-TTATATATTTTTTT
100262 CTATATTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
22 2 0.05
23 10 0.26
24 8 0.21
25 12 0.32
26 6 0.16
ACGTcount: A:0.22, C:0.03, G:0.01, T:0.74
Consensus pattern (24 bp):
TTTTATTATATATTTTTTTACTTG
Found at i:100227 original size:41 final size:42
Alignment explanation
Indices: 100092--100236 Score: 122
Period size: 41 Copynumber: 3.5 Consensus size: 42
100082 CTTTAGTATA
**
100092 TATTT-TTATTTTTTTTAGATTATATATA-A-ATATA-TTATT
1 TATTTATTA-TTTTTTTATTTTATATATATATATATATTTATT
* * * *
100131 TTTATTATCAGTTTTATTAATTTATATATATATATATATTTATT
1 TAT-TTATTA-TTTTTTTATTTTATATATATATATATATTTATT
* *
100175 TACTTTTTTATTTTTTTATTTTATATATATAT-TATTTTTACTT
1 TA-TTTATTATTTTTTTATTTTATATATATATATATATTTA-TT
*
100218 T-TTTATTATTATTTTATTT
1 TATTTATTATTTTTTTATTT
100237 ATTTGTTTTA
Statistics
Matches: 85, Mismatches: 14, Indels: 12
0.77 0.13 0.11
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 34 0.40
42 8 0.09
43 28 0.33
44 10 0.12
45 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (42 bp):
TATTTATTATTTTTTTATTTTATATATATATATATATTTATT
Found at i:100264 original size:12 final size:12
Alignment explanation
Indices: 100242--100273 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
100232 TATTTATTTG
100242 TTTTATTTCTATA
1 TTTT-TTTCTATA
100255 TTTTTTTCTATA
1 TTTTTTTCTATA
100267 TTTTTTT
1 TTTTTTT
100274 TCTTTTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTTTCTATA
Found at i:100274 original size:61 final size:60
Alignment explanation
Indices: 100169--100302 Score: 155
Period size: 61 Copynumber: 2.2 Consensus size: 60
100159 TATATATATA
* * *
100169 TTTATTTACTTTTTTATTTTTTTATTTTATATATATATTATTTTTACTTTTT-TATTATTAT
1 TTTATTTATTTTTTTATTTCTATATTTTATATATATATTATTTTT-CTTTTTCT-TTATTAT
* * * *
100230 TTTATTTATTTGTTTTATTTCTATATTTT-TTTCTATATTTTTTTTCTTTTTCTTTATTTT
1 TTTATTTATTT-TTTTATTTCTATATTTTATATATATATTATTTTTCTTTTTCTTTATTAT
100290 TTATATTTATTTT
1 TT-TATTTATTTT
100303 ACTTACTATT
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
60 15 0.24
61 33 0.52
62 15 0.24
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (60 bp):
TTTATTTATTTTTTTATTTCTATATTTTATATATATATTATTTTTCTTTTTCTTTATTAT
Found at i:100291 original size:12 final size:13
Alignment explanation
Indices: 100226--100301 Score: 66
Period size: 13 Copynumber: 5.8 Consensus size: 13
100216 TTTTTTATTA
*
100226 TTATTTTATTTAT
1 TTATTTTATTTCT
*
100239 TTGTTTTATTTCT
1 TTATTTTATTTCT
*
100252 ATATTTT-TTTCT
1 TTATTTTATTTCT
* *
100264 ATATTTTTTTTCT
1 TTATTTTATTTCT
*
100277 TTTTCTTTATTT-T
1 TTAT-TTTATTTCT
100290 TTATATTTATTT
1 TTAT-TTTATTT
100302 TACTTACTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
12 12 0.23
13 34 0.65
14 6 0.12
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.78
Consensus pattern (13 bp):
TTATTTTATTTCT
Found at i:100408 original size:15 final size:15
Alignment explanation
Indices: 100390--100419 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
100380 AATTTATTTC
*
100390 TTACCTTTTTATCTA
1 TTACCATTTTATCTA
100405 TTACCATTTTATCTA
1 TTACCATTTTATCTA
100420 ACATGGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (15 bp):
TTACCATTTTATCTA
Found at i:106788 original size:6 final size:7
Alignment explanation
Indices: 106769--106797 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
106759 AATGCTCAAG
106769 CGAAAAA
1 CGAAAAA
106776 CGAAAAA
1 CGAAAAA
106783 CGAAAAA
1 CGAAAAA
106790 CGAAAAA
1 CGAAAAA
106797 C
1 C
106798 AAAGAGTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.69, C:0.17, G:0.14, T:0.00
Consensus pattern (7 bp):
CGAAAAA
Found at i:108412 original size:2 final size:2
Alignment explanation
Indices: 108405--108452 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
108395 TTGACATTGT
108405 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
108447 TA TA TA
1 TA TA TA
108453 ATACTTGATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:109414 original size:13 final size:15
Alignment explanation
Indices: 109396--109432 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 15
109386 TACTTTGATC
109396 TTATAATTTT-TT-A
1 TTATAATTTTATTAA
109409 TTATAATTTTATTAA
1 TTATAATTTTATTAA
109424 TTA-AATTTT
1 TTATAATTTT
109433 GTGTAGCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 10 0.45
14 8 0.36
15 4 0.18
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATAATTTTATTAA
Found at i:112721 original size:20 final size:20
Alignment explanation
Indices: 112667--112724 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
112657 GTTTTCTAAC
* * *
112667 ATCGGTACTGTTCACACAAT
1 ATCGATACTATTCATACAAT
*
112687 ATCGATACTATTCATACATT
1 ATCGATACTATTCATACAAT
112707 ATCGATACTATTCATACA
1 ATCGATACTATTCATACA
112725 GTGTAGTACT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (20 bp):
ATCGATACTATTCATACAAT
Found at i:112736 original size:19 final size:20
Alignment explanation
Indices: 112690--112741 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
112680 ACACAATATC
* *
112690 GATACTATTCATACATTATC
1 GATACTATTCATACAGTATA
*
112710 GATACTATTCATACAGTGTA
1 GATACTATTCATACAGTATA
112730 G-TACTATTCATA
1 GATACTATTCATA
112742 AAAATATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 11 0.38
20 18 0.62
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (20 bp):
GATACTATTCATACAGTATA
Found at i:116720 original size:2 final size:2
Alignment explanation
Indices: 116713--116751 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
116703 ATTCATAGAT
116713 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
116752 TATTTAACGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:117944 original size:25 final size:25
Alignment explanation
Indices: 117889--117947 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
117879 ATAAGTCTAG
* **
117889 ATTCAATATTTTGATACATGATGACA
1 ATTC-ATATTATGATACATGACCACA
* *
117915 TTTCATATTATGATACATGACCAGA
1 ATTCATATTATGATACATGACCACA
117940 ATTCATAT
1 ATTCATAT
117948 CATATGAATT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 24 0.89
26 3 0.11
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (25 bp):
ATTCATATTATGATACATGACCACA
Found at i:118053 original size:30 final size:31
Alignment explanation
Indices: 117996--118055 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
117986 TATGAGCTAC
117996 GTGATAAAGATATGGAAAATGACATGTCTAT
1 GTGATAAAGATATGGAAAATGACATGTCTAT
* *
118027 GTGATAAAGGTATGG-AAATGATATGTCTA
1 GTGATAAAGATATGGAAAATGACATGTCTA
118056 CGCGATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 13 0.48
31 14 0.52
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (31 bp):
GTGATAAAGATATGGAAAATGACATGTCTAT
Found at i:118334 original size:23 final size:23
Alignment explanation
Indices: 118308--118374 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 23
118298 CACTACGGTG
*
118308 CAATTCTACGTGGCACTTCGATA
1 CAATTCTACGTGGCACTTCGAGA
* *
118331 CAATTCTACGCGGTC-CTTCGGGA
1 CAATTCTACGTGG-CACTTCGAGA
118354 CAAATTCTACGTGGCACTTCG
1 C-AATTCTACGTGGCACTTCG
118375 GTGCAAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 20 0.54
24 17 0.46
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (23 bp):
CAATTCTACGTGGCACTTCGAGA
Found at i:118373 original size:24 final size:24
Alignment explanation
Indices: 118309--118383 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
118299 ACTACGGTGC
**
118309 AATTCTACGTGGCACTTCGATAC-
1 AATTCTACGTGGCACTTCGGGACA
*
118332 AATTCTACGCGGTC-CTTCGGGACA
1 AATTCTACGTGG-CACTTCGGGACA
118356 AATTCTACGTGGCACTTCGGTG-CA
1 AATTCTACGTGGCACTTCGG-GACA
118380 AATT
1 AATT
118384 TATACGAGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
23 19 0.43
24 24 0.55
25 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.29
Consensus pattern (24 bp):
AATTCTACGTGGCACTTCGGGACA
Found at i:119036 original size:20 final size:20
Alignment explanation
Indices: 118999--119037 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
118989 ATGCATCGAT
* *
118999 GCACTGTAGCACTATTCACG
1 GCACTGTAACAATATTCACG
*
119019 GCACTGTAACAATGTTCAC
1 GCACTGTAACAATATTCAC
119038 ATTACTGTTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (20 bp):
GCACTGTAACAATATTCACG
Found at i:119711 original size:24 final size:24
Alignment explanation
Indices: 119684--119738 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
119674 GATTAAAAAG
119684 GACAAATGATGATTTGGAACTATT
1 GACAAATGATGATTTGGAACTATT
119708 GACAAATGATGATTTGGAACTATT
1 GACAAATGATGATTTGGAACTATT
*
119732 GTCAAAT
1 GACAAAT
119739 AATAATAAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (24 bp):
GACAAATGATGATTTGGAACTATT
Found at i:120986 original size:2 final size:2
Alignment explanation
Indices: 120968--121004 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
120958 AAACTTATTA
120968 AT AT -T AT AT -T A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121005 TTAAAGTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
1 3 0.09
2 29 0.91
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Done.