genome.fa.s1209.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001209.1 Hibiscus syriacus cultivar Beakdansim tig00002390_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162536

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7345--7373	14	2.1	14	100	0	58	48	6	17	27	1.72
20195--20238	22	2.0	22	82	8	54	31	15	0	52	1.44
25737--25770	6	5.7	6	100	0	68	32	0	0	67	0.91
36063--36141	39	2.0	39	97	0	149	36	10	7	45	1.66
38576--38611	16	2.2	17	90	5	56	33	5	11	50	1.61
42070--42095	2	13.0	2	100	0	52	50	0	0	50	1.00
54935--55451	55	9.6	55	79	11	461	29	24	16	29	1.96
55002--55459	161	2.9	157	80	12	499	29	24	15	29	1.96
55466--55537	37	2.0	36	91	2	117	22	22	20	34	1.97
56827--57022	16	12.2	16	74	16	110	7	17	0	74	1.08
56838--56953	48	2.4	50	80	11	125	6	18	0	74	1.08
56819--56983	42	3.9	42	76	13	121	7	16	0	75	1.06
56835--57022	8	23.5	8	71	22	73	7	17	0	74	1.08
56835--57022	15	12.8	15	68	21	55	7	17	0	74	1.08
66678--66810	44	2.9	45	89	3	196	39	21	9	29	1.86
72330--72382	24	2.4	21	84	9	61	24	41	3	30	1.72
73664--73704	19	2.0	21	86	9	59	60	4	0	34	1.18
74542--74581	15	2.7	15	92	0	71	12	42	25	20	1.86
75305--75389	9	8.2	11	79	18	69	58	1	0	40	1.05
75317--75394	3	26.0	3	92	0	129	62	1	0	35	1.03
75671--75774	41	2.7	38	82	11	131	20	24	8	47	1.78
75809--76476	113	5.9	113	86	3	819	28	18	14	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75721--76477	341	2.3	338	85	6	997	28	18	14	38	1.90
77295--77851	85	6.5	84	90	2	812	34	21	14	28	1.93
77295--77856	168	3.3	168	92	2	876	34	21	15	28	1.94
79001--79042	10	4.1	10	87	6	66	0	14	0	85	0.59
90229--90269	20	2.0	21	86	13	59	63	4	0	31	1.15
91850--91933	3	28.0	3	92	0	114	59	0	1	39	1.05
91841--91929	18	5.3	15	82	15	63	57	0	1	41	1.06
95093--95247	21	7.5	21	70	9	88	25	21	18	34	1.96
95237--95324	20	4.3	20	81	2	113	39	18	20	21	1.92
95155--95269	41	2.8	41	75	7	110	26	22	18	32	1.97
95237--95324	41	2.2	40	85	2	113	39	18	20	21	1.92
95848--95900	19	2.7	20	80	13	74	43	22	20	13	1.86
95926--96071	19	8.1	19	69	17	69	13	21	20	43	1.86
95948--96043	33	2.9	33	95	1	156	13	22	23	39	1.90
96014--96071	20	2.9	20	82	10	73	13	22	18	44	1.85
99635--99670	14	2.6	14	95	0	63	30	0	25	44	1.54
99777--99868	33	2.8	33	91	3	141	46	21	18	13	1.82
99777--99885	19	6.3	18	74	20	90	44	22	18	14	1.85
99887--100011	19	7.4	19	64	24	73	13	22	17	46	1.83
99885--100011	33	3.8	33	95	0	218	13	22	18	45	1.84
99939--99993	14	3.6	14	73	21	56	14	20	20	45	1.85
103381--103432	21	2.5	21	90	3	79	40	17	21	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103400--103493	41	2.3	42	85	5	129	36	24	19	20	1.95
103421--103530	20	5.4	20	84	6	114	30	27	19	23	1.98
103417--103548	40	3.3	40	82	1	156	33	25	18	22	1.97
103463--103539	20	3.8	20	96	0	127	24	27	20	27	1.99
103803--103873	33	2.2	33	81	0	79	19	19	21	39	1.93
105436--105529	42	2.2	42	84	5	127	20	14	42	22	1.88
105892--105945	20	2.7	20	85	2	81	42	25	18	12	1.86
105931--105986	14	3.6	14	74	21	58	46	25	17	10	1.80
105911--105991	33	2.4	33	89	2	126	44	24	19	11	1.83
106000--106050	19	2.7	19	93	0	93	13	19	19	47	1.83
106075--106119	20	2.2	20	88	0	63	15	22	26	35	1.94
106660--106707	18	2.7	18	93	0	87	14	12	45	27	1.81
108029--108070	20	2.1	20	86	0	57	52	21	14	11	1.73
108350--108393	22	2.0	22	95	0	79	18	11	45	25	1.82
108580--108690	40	2.7	41	83	1	134	23	14	27	35	1.93
108566--108697	41	3.2	41	79	2	167	22	13	25	37	1.91
108580--108693	20	5.7	20	76	6	104	23	14	27	34	1.94
108688--108755	21	3.3	21	91	2	102	22	22	16	39	1.92
108580--108714	41	3.3	40	81	3	137	23	16	25	34	1.95
108745--108797	21	2.5	22	81	6	74	33	18	26	20	1.96
112031--112168	74	1.9	74	92	3	233	38	19	7	34	1.80
115263--115291	14	2.1	14	100	0	58	13	13	17	55	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115578--115608	14	2.2	14	94	0	53	3	12	25	58	1.50
115683--115714	16	2.0	16	100	0	64	12	6	18	62	1.50
117721--117745	5	5.0	5	100	0	50	40	0	0	60	0.97
118506--118548	22	2.0	22	86	9	61	62	6	13	16	1.51
119128--119195	24	2.8	25	82	10	72	17	5	1	75	1.08
120261--120304	21	2.2	19	84	8	52	18	9	0	72	1.10
123184--123378	95	2.1	94	87	6	286	31	16	18	33	1.93
124595--125049	65	6.9	65	73	15	371	28	19	11	41	1.86
124672--124791	36	3.4	35	81	7	138	27	19	10	42	1.84
124606--125049	199	2.2	197	92	1	737	28	19	11	41	1.85
124870--124953	36	2.4	36	77	2	98	29	20	8	41	1.81
124823--125079	132	2.0	130	85	3	345	26	20	11	41	1.86
125062--125096	15	2.3	15	90	0	52	22	22	17	37	1.94
126990--127041	6	8.7	6	80	4	52	19	3	1	75	1.06
126962--127033	18	4.2	17	71	8	56	13	5	4	76	1.12
131780--131812	17	1.9	17	93	0	57	33	3	45	18	1.65
144342--144384	21	2.0	21	95	0	77	27	16	23	32	1.96
153972--154068	33	3.0	31	82	7	97	51	5	3	40	1.40
153974--154069	32	3.0	33	82	7	92	53	5	2	39	1.35

Tables:   1

The End!