Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001210.1 Hibiscus syriacus cultivar Beakdansim tig00002392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66610

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2506--2583
35
2.2
35
97
0
147
30
7
32
29
1.85
5198--5223
2
13.0
2
100
0
52
50
0
50
0
1.00
9639--9736
49
2.0
48
82
9
119
45
13
10
30
1.76
16521--16722
65
3.1
63
78
12
205
31
24
17
26
1.97
16956--16981
7
3.7
7
100
0
52
57
15
15
11
1.65
17894--17967
20
3.7
20
78
7
78
33
24
21
20
1.97
18002--18045
22
2.0
23
95
4
81
22
22
29
25
1.99
18145--18204
30
2.0
30
90
6
95
43
16
8
31
1.78
20995--21058
34
1.9
32
84
6
83
25
28
17
29
1.97
21277--21316
21
1.9
22
90
10
66
12
10
40
37
1.77
21331--21372
21
2.0
22
90
4
68
23
23
26
26
2.00
21418--21490
20
3.6
19
76
7
65
30
21
26
21
1.99
21517--21631
42
2.7
41
83
10
135
22
18
33
25
1.96
21517--21631
21
5.5
21
79
9
119
22
18
33
25
1.96
21710--21768
30
2.0
31
90
6
95
44
16
5
33
1.70
24560--24630
34
2.1
34
82
5
83
26
25
14
33
1.94
27110--27162
27
2.0
27
88
7
81
35
5
0
58
1.22
31426--31471
19
2.4
19
96
0
83
54
30
8
6
1.56
32784--32846
32
2.0
32
96
0
117
42
15
19
22
1.88
35172--35350
74
2.4
75
82
3
200
34
17
18
29
1.94
36627--36681
19
2.7
20
78
16
60
34
12
12
40
1.82
37345--38605
73
17.3
73
90
0
1954
26
18
21
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38762--38796
3
11.3
3
87
6
52
34
0
0
65
0.93
41311--41404
20
4.7
20
84
2
107
28
23
27
20
1.99
41311--41404
41
2.3
40
87
1
125
28
23
27
20
1.99
41427--41451
12
2.1
12
100
0
50
16
24
36
24
1.94
41581--41638
30
2.0
29
86
10
82
43
18
5
32
1.73
41581--41640
29
2.0
30
90
6
95
41
18
6
33
1.76
42044--42068
13
1.9
13
100
0
50
8
12
32
48
1.69
52308--52395
44
2.0
44
97
0
167
46
11
18
23
1.81
53760--53806
15
3.1
15
77
17
51
38
0
0
61
0.96
56284--56319
16
2.2
16
90
0
54
80
0
2
16
0.83
56282--56321
17
2.4
17
82
0
53
80
0
2
17
0.83
56524--56556
16
2.1
16
88
5
50
36
0
3
60
1.12
57928--57977
2
26.0
2
76
8
50
52
0
0
48
1.00
57928--58014
44
2.0
42
91
4
138
50
0
0
49
1.00
59495--59557
24
2.6
24
100
0
126
20
36
25
17
1.94
65697--65723
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!