genome.fa.s1211.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001211.1 Hibiscus syriacus cultivar Beakdansim tig00002393_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70988

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85--158	8	9.1	8	78	8	60	68	2	0	28	1.03
66--110	21	2.1	21	87	0	63	73	0	0	26	0.84
76--148	37	1.9	39	88	5	114	67	2	0	30	1.05
71--130	13	4.8	13	76	15	63	70	0	0	30	0.88
9599--9661	20	3.4	20	69	26	66	30	4	19	46	1.70
9591--9708	34	3.3	36	88	8	161	33	5	17	44	1.71
10087--10111	12	2.1	12	100	0	50	28	16	16	40	1.89
14203--14322	35	3.3	36	86	9	165	31	4	20	44	1.70
24437--24461	2	12.5	2	100	0	50	52	0	0	48	1.00
26254--26411	21	7.8	20	72	7	86	38	25	17	18	1.92
26378--26648	20	13.5	20	85	2	301	39	24	17	18	1.92
26397--26648	101	2.5	101	83	5	289	38	25	17	19	1.92
27330--27376	24	2.0	24	87	8	69	25	14	21	38	1.92
29846--29951	33	3.2	33	84	10	155	45	19	21	13	1.84
29886--30079	19	10.9	19	79	16	229	44	17	23	14	1.85
29886--30073	52	3.6	52	89	5	256	45	17	22	14	1.84
29944--30073	33	3.8	33	86	9	188	45	17	22	14	1.85
29925--30079	71	2.2	71	96	0	283	44	17	22	15	1.86
30088--30183	19	5.4	19	83	13	132	14	21	17	45	1.84
30051--30164	52	2.2	52	87	0	156	19	24	18	37	1.94
30069--30183	52	2.2	51	95	1	203	13	24	18	43	1.86
30289--30324	14	2.6	14	86	4	56	47	22	0	30	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32244--32310	20	3.4	20	85	8	84	46	26	16	10	1.79
32297--32357	14	4.1	14	75	20	61	47	21	21	9	1.79
32244--32379	19	7.6	19	75	17	121	46	23	19	11	1.81
32281--32374	33	2.8	33	93	1	161	47	21	20	10	1.79
32420--32573	20	7.7	20	81	7	168	18	18	26	37	1.93
32419--32573	40	3.8	40	82	4	186	18	18	26	37	1.93
32560--32642	21	4.0	21	73	6	78	25	16	24	33	1.96
32540--32638	42	2.4	43	77	11	100	21	18	23	37	1.94
34292--34342	20	2.5	21	78	12	52	29	1	1	66	1.13
35869--35903	18	2.1	17	89	10	54	22	37	0	40	1.55
37876--37937	23	2.7	23	90	2	90	22	22	32	22	1.98
44026--44164	23	5.6	25	72	16	94	46	2	8	42	1.49
44031--44098	22	3.0	22	85	6	84	47	1	8	42	1.43
44058--44183	24	4.9	25	75	15	80	42	3	8	44	1.54
44057--44184	27	4.9	27	76	17	121	43	3	8	43	1.53
44179--44236	24	2.3	24	82	11	64	39	1	5	53	1.33
45441--45481	15	2.9	14	85	7	57	26	9	0	63	1.25
45423--45480	29	2.0	27	84	15	73	24	12	3	60	1.47
46200--46276	26	3.0	27	80	12	83	42	0	1	55	1.07
46183--46343	63	2.5	63	94	5	272	39	0	1	58	1.09
46164--46342	14	14.3	13	66	19	80	39	0	1	59	1.08
46325--46366	17	2.4	18	76	4	50	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46833--46892	31	1.9	31	93	0	102	43	10	6	40	1.64
46910--46952	16	2.7	16	88	0	68	23	4	4	67	1.28
48255--48342	29	3.0	29	86	1	122	38	3	15	42	1.64
49661--49932	39	7.0	39	81	1	294	18	24	23	34	1.96
49672--49932	117	2.2	117	85	2	337	18	24	22	34	1.96
53554--53591	17	2.2	17	86	9	51	42	0	7	50	1.31
64592--64638	3	15.3	3	87	12	69	34	2	0	63	1.06
66417--66449	2	17.5	2	87	12	52	48	0	0	51	1.00

Tables:   1

The End!