Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001212.1 Hibiscus syriacus cultivar Beakdansim tig00002394_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57107

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7469--7508
6
6.7
6
91
8
64
32
0
0
67
0.91
17416--17456
18
2.3
18
100
0
82
9
4
29
56
1.53
20943--21005
14
4.2
15
70
24
53
61
1
1
34
1.15
22249--22344
44
2.2
44
90
3
149
33
17
16
32
1.93
24953--24995
22
1.9
22
90
4
68
72
4
2
20
1.14
25466--25698
113
2.1
113
85
2
308
34
10
10
45
1.72
25521--25622
48
2.2
45
82
10
116
35
11
9
43
1.75
26141--26242
35
2.9
35
97
0
186
36
19
11
32
1.88
28777--28832
25
2.2
26
80
3
69
64
0
0
35
0.94
29423--29468
21
2.2
21
84
7
58
43
15
6
34
1.72
30201--30230
2
15.0
2
100
0
60
50
0
0
50
1.00
30942--31004
25
2.5
24
74
7
63
60
7
1
30
1.35
31696--31818
34
3.6
34
79
5
126
32
19
14
33
1.92
32810--32862
20
2.7
20
93
0
88
45
24
7
22
1.78
34203--34310
45
2.4
45
89
7
157
32
14
22
30
1.94
34840--34890
2
25.5
2
100
0
102
50
0
0
49
1.00
35345--35370
9
2.9
9
100
0
52
53
11
23
11
1.69
37222--37303
35
2.6
30
79
20
105
62
0
0
37
0.96
37230--37285
25
2.2
26
80
3
69
64
0
0
35
0.94
37879--37924
21
2.2
21
88
7
67
45
15
4
34
1.66
39376--39438
25
2.5
24
74
7
63
60
7
1
30
1.35
40130--40252
34
3.6
34
79
5
126
32
19
14
33
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45393--45474
23
3.6
22
72
8
76
26
21
25
25
2.00
51222--51271
19
2.6
19
87
0
73
30
20
26
24
1.98
51261--51463
63
3.2
61
78
12
212
27
18
24
30
1.98
53323--53370
16
2.8
18
81
12
64
37
0
0
62
0.95
53554--53586
13
2.5
13
95
0
57
45
15
0
39
1.46
54538--54572
2
18.0
2
94
5
63
48
0
0
51
1.00

Tables:   1

The End!