Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001213.1 Hibiscus syriacus cultivar Beakdansim tig00002395_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68785

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1127--1240
39
2.9
40
83
7
153
16
16
19
47
1.83
1137--1240
40
2.7
40
82
8
142
18
17
19
45
1.86
1493--1587
26
3.5
26
75
20
70
44
2
2
51
1.25
1759--1818
20
3.1
19
92
4
95
40
11
10
38
1.75
1765--1827
20
3.2
20
86
4
58
38
14
7
39
1.75
1801--1881
15
5.5
15
85
5
112
34
19
7
38
1.80
1801--1881
29
2.8
30
92
3
130
34
19
7
38
1.80
1801--1886
44
2.0
44
92
0
145
32
19
6
40
1.79
3708--3887
30
6.1
29
69
14
102
60
10
12
16
1.59
5457--5502
17
2.6
18
80
16
60
0
26
17
56
1.41
6253--7099
223
3.8
226
91
4
1332
28
19
14
38
1.91
6253--7099
113
7.6
113
90
4
1332
28
19
14
38
1.91
7908--8423
165
3.1
165
96
2
928
36
23
13
26
1.92
7908--8423
83
6.2
83
96
1
930
36
23
13
26
1.92
9562--9616
13
4.5
12
79
18
60
0
16
0
83
0.64
9562--9616
19
2.9
19
86
10
85
0
16
0
83
0.64
9561--9620
12
4.7
13
78
15
63
0
18
0
81
0.69
9562--9620
7
9.0
7
78
14
63
0
16
0
83
0.66
18054--18118
24
2.8
23
79
4
69
61
1
1
35
1.15
20230--20287
3
20.0
3
77
13
59
65
0
0
34
0.93
22369--22634
130
2.0
131
84
4
342
24
16
32
25
1.96
22687--22925
66
3.6
66
86
0
325
38
13
22
25
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22744--22785
21
2.0
20
86
4
57
42
16
21
19
1.89
22733--22856
36
3.6
35
68
12
96
37
13
20
27
1.91
22687--22925
132
1.8
133
87
0
363
38
13
22
25
1.91
22687--22973
132
2.2
133
83
2
353
37
12
21
28
1.90
22934--23048
36
3.0
40
77
11
107
35
10
18
35
1.85
24229--24279
14
3.6
14
81
5
66
1
11
5
80
0.97
24276--24343
26
2.6
26
83
2
91
2
19
7
70
1.24
24264--24338
33
2.3
31
77
8
78
2
20
6
70
1.22
28045--28166
30
4.1
30
70
12
108
59
8
12
19
1.57
29649--29692
3
14.7
3
90
0
70
65
0
2
31
1.05
30066--30385
158
2.0
159
99
0
633
23
18
18
39
1.92
38059--38163
21
5.0
21
86
9
135
20
23
21
34
1.97
38277--38309
5
6.6
5
89
10
50
36
24
39
0
1.56
38271--38309
15
2.6
15
84
12
53
35
28
35
0
1.58
38765--38798
12
3.1
11
91
8
52
0
17
52
29
1.45
38872--39266
21
19.0
21
90
4
565
33
23
24
19
1.97
42136--42179
20
2.1
21
91
4
72
47
25
11
15
1.79
50312--50349
17
2.2
17
95
0
67
47
5
23
23
1.72
53797--54007
47
4.5
47
77
7
205
28
16
18
36
1.92
54390--54479
17
5.3
17
72
10
60
58
7
12
21
1.58
57038--57087
23
2.2
23
85
0
64
44
4
18
34
1.68
56914--57140
87
2.6
87
85
0
310
45
9
11
33
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57158--57659
200
2.5
199
84
3
636
31
15
14
39
1.87
58092--58226
60
2.2
60
100
0
270
35
16
14
34
1.88
68057--68104
24
2.0
24
100
0
96
8
8
12
70
1.32

Tables:   1

The End!