genome.fa.s1216.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001216.1 Hibiscus syriacus cultivar Beakdansim tig00002403_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102490

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1184--1262	3	25.7	3	82	10	97	63	0	0	36	0.95
1494--4047	113	22.8	113	82	5	3009	29	18	14	37	1.90
1937--1990	17	3.1	17	71	23	58	18	24	7	50	1.72
1494--4055	229	11.4	226	89	5	2972	29	18	14	37	1.90
3510--3559	17	2.9	17	70	21	50	22	18	10	50	1.76
1479--4047	791	3.3	780	88	5	3559	29	18	14	37	1.91
4455--4531	22	3.5	22	83	0	109	40	12	12	33	1.82
4885--5088	54	3.9	54	80	5	204	25	21	15	38	1.92
7060--7279	114	1.9	114	91	1	361	30	20	15	33	1.94
9526--9576	7	7.4	7	76	12	52	0	13	3	82	0.81
9526--9576	13	3.8	13	77	10	57	0	13	3	82	0.81
9525--9577	28	2.0	27	85	7	72	0	13	5	81	0.86
9870--9914	2	22.5	2	100	0	90	51	0	0	48	1.00
14321--14370	24	2.1	24	88	7	75	62	4	6	28	1.37
16501--16576	3	24.7	3	81	10	91	61	0	0	38	0.96
21147--21429	139	2.1	137	84	2	361	38	17	14	28	1.89
31417--31476	21	2.9	21	94	0	102	41	21	16	20	1.90
31406--31502	21	4.6	21	83	5	99	42	20	20	16	1.89
35360--35768	128	3.2	128	91	1	626	34	15	27	22	1.94
36520--36717	36	5.5	35	83	5	211	36	23	18	21	1.95
36530--36665	72	1.9	72	93	3	238	38	22	21	17	1.93
36520--36717	108	1.8	108	83	4	265	36	23	18	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37100--37823	155	4.6	155	84	6	845	33	19	24	21	1.97
37100--38148	109	9.9	101	77	11	729	32	19	24	23	1.97
37828--38031	55	3.7	55	75	15	206	30	16	24	27	1.97
37719--38193	54	8.7	52	75	13	279	31	18	23	25	1.98
37090--38198	51	20.8	52	77	11	714	33	18	24	23	1.97
46367--46391	11	2.3	11	100	0	50	24	12	24	40	1.88
56673--56704	16	2.0	16	100	0	64	37	6	25	31	1.81
62631--62672	22	1.9	22	90	0	66	50	0	2	47	1.14
66798--66888	31	3.0	31	80	9	89	46	13	5	35	1.66
72138--72261	50	2.5	48	76	10	117	36	16	11	36	1.84
76879--76916	18	2.1	18	100	0	76	31	15	15	36	1.90
79253--79316	23	2.8	22	85	4	83	26	26	26	20	1.99
79415--79467	21	2.6	21	76	8	56	41	20	11	26	1.86
79324--79549	103	2.2	103	91	1	364	37	23	12	26	1.91
80020--80057	20	1.9	20	94	0	67	13	31	31	23	1.93
83558--83597	21	1.9	21	84	0	53	22	20	7	50	1.73
86164--86224	23	2.7	23	81	0	68	31	26	21	21	1.98
86248--86465	103	2.1	103	94	1	384	37	23	12	26	1.91
86938--86975	20	1.9	20	88	0	58	10	31	34	23	1.89
89370--89412	19	2.4	19	84	7	54	23	27	20	27	1.99
92593--92850	129	2.0	129	99	0	507	35	11	16	36	1.84
96838--96881	21	2.1	21	82	0	52	9	43	15	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99775--99814	19	2.1	19	86	9	55	42	5	2	50	1.37
99806--99840	2	17.5	2	100	0	70	48	0	0	51	1.00

Tables:   1

The End!