genome.fa.s1217.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001217.1 Hibiscus syriacus cultivar Beakdansim tig00002404_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69073

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1679--1965	42	6.7	42	77	8	199	50	4	18	26	1.67
1728--1953	44	5.3	42	77	8	147	49	4	20	25	1.67
1789--2117	44	7.7	42	76	10	195	53	4	16	26	1.61
1915--2011	42	2.3	42	82	7	108	48	5	18	27	1.69
1743--2074	128	2.6	127	79	9	304	51	4	17	26	1.64
2050--2136	13	6.4	13	78	10	93	62	2	10	25	1.39
2001--2118	43	2.7	43	90	6	177	60	3	10	26	1.45
9356--9397	21	2.0	21	90	0	66	11	21	14	52	1.73
18872--18934	21	3.0	21	97	0	117	11	23	14	50	1.74
28699--28755	19	2.9	19	86	2	87	47	22	17	12	1.81
28755--28933	19	9.8	19	76	16	164	11	20	22	45	1.83
28755--28933	33	4.9	38	76	16	164	11	20	22	45	1.83
28876--28933	20	2.9	20	80	10	64	13	24	18	43	1.87
30937--31059	42	2.9	42	80	2	122	22	36	17	22	1.95
30993--31059	21	3.2	21	66	6	55	23	35	20	19	1.95
32419--32455	14	2.6	15	79	16	51	32	2	21	43	1.67
32634--32731	19	5.7	19	68	22	81	13	24	19	42	1.87
32638--32731	33	2.8	33	95	0	161	13	24	19	42	1.87
35029--35053	12	2.1	12	100	0	50	0	28	0	72	0.86
35228--35281	24	2.2	24	90	0	81	38	20	16	24	1.92
36341--36391	20	2.5	20	87	0	75	37	25	19	17	1.94
36341--36398	20	2.9	20	82	5	73	41	22	18	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36420--36514	39	2.7	33	80	17	127	14	21	16	47	1.82
36417--36504	19	4.8	19	85	12	123	14	21	15	47	1.82
36427--36504	39	2.0	39	92	0	129	15	20	14	50	1.78
36417--36533	33	3.4	33	80	13	135	14	22	18	44	1.86
38505--38641	32	3.9	37	77	13	107	43	24	18	12	1.85
38524--38590	19	3.5	19	87	4	98	38	23	22	14	1.92
38579--38636	14	3.9	14	79	16	71	48	25	17	8	1.75
38563--38641	32	2.4	33	95	2	142	46	24	18	10	1.80
38648--38729	19	4.7	18	78	15	91	13	20	19	46	1.83
38694--38757	19	3.3	19	86	2	83	17	23	18	40	1.91
38695--38768	20	3.8	19	83	5	67	16	22	21	39	1.92
39241--39285	18	2.5	18	88	0	72	13	15	44	26	1.83
40604--40641	20	1.9	20	88	0	58	50	21	15	13	1.78
41136--41188	20	2.7	20	93	0	88	24	18	28	28	1.98
41116--41230	20	5.7	20	76	5	79	24	15	23	36	1.94
41219--41294	21	3.7	21	82	3	109	17	25	17	40	1.90
41158--41292	41	3.3	41	81	7	132	20	20	20	39	1.93
41219--41309	20	4.4	20	80	4	101	17	25	16	40	1.90
41219--41309	41	2.2	41	98	0	173	17	25	16	40	1.90
41219--41326	41	2.6	41	88	0	108	21	23	17	37	1.94

Tables:   1

The End!