genome.fa.s1218.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001218.1 Hibiscus syriacus cultivar Beakdansim tig00002406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68557

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25738--25833	27	3.6	27	87	8	144	29	10	15	44	1.80
29504--29598	27	3.6	27	91	2	149	30	9	15	44	1.79
30303--30606	54	5.6	54	91	0	448	32	18	18	30	1.94
30955--30997	22	2.0	22	85	0	59	20	25	13	39	1.90
31298--31341	20	2.1	21	83	4	54	45	29	2	22	1.65
37062--37121	24	2.5	24	100	0	120	46	15	10	28	1.77
37275--37313	13	2.9	14	84	7	62	38	12	0	48	1.42
38370--38408	21	1.9	21	84	5	53	48	0	10	41	1.37
38701--38767	23	2.9	23	84	4	91	55	25	2	16	1.55
41328--41480	37	4.4	36	71	17	128	37	13	22	27	1.91
41266--41695	101	4.3	101	77	12	391	37	13	20	27	1.91
41359--41511	64	2.3	65	88	3	218	37	13	20	28	1.91
41428--41693	36	7.9	36	65	19	119	36	14	19	29	1.92
41297--41680	198	1.9	201	82	5	476	36	13	20	28	1.91
41820--42625	106	7.6	106	92	0	1292	23	17	25	33	1.96
43669--44732	165	6.4	165	82	3	1223	25	20	23	29	1.99
43669--44732	249	4.3	246	87	3	1404	25	20	23	29	1.99
50958--51003	18	2.6	18	96	3	85	36	8	23	30	1.85
51547--51629	32	2.5	33	88	7	125	40	37	9	12	1.75
52703--52771	30	2.3	30	74	0	75	39	14	15	30	1.88
53709--53774	28	2.3	28	81	2	78	36	12	10	40	1.77
56779--56844	33	2.0	33	90	3	105	21	12	24	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64651--64692	21	2.0	20	86	4	57	38	14	7	40	1.73

Tables:   1

The End!