Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001219.1 Hibiscus syriacus cultivar Beakdansim tig00002408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89154

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1862--1898
12
3.0
12
92
4
56
35
8
0
56
1.29
8949--9041
20
4.7
20
87
0
132
32
23
21
22
1.98
9061--9137
21
3.7
21
89
1
120
19
19
37
23
1.94
9359--9398
21
1.9
21
89
0
62
47
7
12
32
1.69
9846--9880
14
2.6
13
86
8
52
54
5
8
31
1.54
9854--9881
14
2.0
14
100
0
56
57
7
7
28
1.52
10528--10575
19
2.5
20
82
3
62
29
12
6
52
1.63
11721--11781
21
2.9
21
87
4
88
14
9
37
37
1.80
11899--11937
12
3.6
12
74
25
50
30
23
28
17
1.97
11893--11946
20
2.7
20
94
0
90
31
24
24
20
1.98
11966--12022
21
2.7
21
91
5
89
26
19
33
21
1.97
12344--12433
18
4.8
18
77
10
90
21
22
31
25
1.98
12357--12433
40
1.9
40
86
0
109
23
20
29
25
1.99
13632--13673
17
2.4
18
88
4
68
35
4
7
52
1.50
16762--16800
16
2.4
16
87
8
53
43
2
0
53
1.14
24010--24046
2
18.5
2
100
0
74
51
0
0
48
1.00
27059--27092
16
2.1
16
88
0
50
50
0
2
47
1.16
27066--27102
16
2.2
16
90
4
56
40
0
8
51
1.32
27132--27165
16
2.0
18
88
11
54
26
2
5
64
1.30
27659--27705
23
2.1
23
84
7
62
34
14
14
36
1.88
27632--27879
130
1.9
130
90
0
397
35
12
15
36
1.86
28276--28351
35
2.2
35
90
0
116
35
1
25
38
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31346--31448
49
2.2
48
80
5
120
23
9
32
34
1.87
35167--35193
13
2.1
13
100
0
54
37
7
14
40
1.74
50181--50205
2
12.5
2
100
0
50
0
48
0
52
1.00
50488--50582
49
2.0
48
95
2
172
38
5
8
47
1.56
50669--50721
23
2.3
23
84
9
65
62
0
0
37
0.96
53706--53800
29
3.2
28
71
14
75
33
16
2
47
1.59
53678--53809
60
2.2
60
82
2
158
33
15
6
45
1.70
53678--53856
60
3.0
60
78
7
141
32
18
5
43
1.72
53994--54051
29
2.0
29
86
3
80
44
3
22
29
1.69
54983--55064
31
2.6
31
98
0
155
21
10
17
50
1.77
55108--55168
10
5.5
10
71
21
50
60
18
9
11
1.57
55108--55173
23
2.9
23
81
2
89
60
19
9
10
1.56
55428--55463
18
2.0
18
100
0
72
61
11
11
16
1.57
60711--60735
2
12.5
2
100
0
50
0
52
0
48
1.00
69323--69349
13
2.1
13
100
0
54
77
0
0
22
0.76
77844--77885
21
2.0
21
90
0
66
33
4
21
40
1.74
78310--78745
179
2.5
182
88
6
621
28
16
13
41
1.86
84929--84954
6
4.3
6
100
0
52
46
0
0
53
1.00

Tables:   1

The End!