genome.fa.s122.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000122.1 Hibiscus syriacus cultivar Beakdansim tig00000221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  200435

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3089--3125	18	2.1	18	89	0	56	32	27	16	24	1.96
8905--8944	13	3.3	13	83	13	50	7	7	20	65	1.43
8899--8956	23	2.6	21	76	10	62	10	6	15	67	1.41
9972--10010	15	2.7	15	88	4	53	30	20	20	28	1.98
10454--10492	16	2.6	16	88	8	55	28	7	20	43	1.79
10569--10639	23	3.1	23	81	0	79	19	26	21	32	1.97
10810--10842	2	16.5	2	100	0	66	51	0	0	48	1.00
17430--17573	45	3.2	46	84	3	177	35	9	18	36	1.84
17535--17573	16	2.6	15	88	8	53	28	7	20	43	1.79
17663--17756	23	4.1	23	74	8	84	19	20	25	35	1.96
17647--17743	46	2.1	46	84	3	124	19	22	22	35	1.96
21378--21416	2	19.5	2	100	0	78	48	0	0	51	1.00
22620--22662	19	2.2	20	87	4	61	55	0	4	39	1.20
23728--23776	23	2.0	25	84	7	66	53	0	2	44	1.12
23826--23870	22	2.0	22	86	8	63	57	0	0	42	0.98
25411--25463	3	17.7	3	84	7	72	62	0	0	37	0.96
25411--25463	21	2.5	21	93	6	90	62	0	0	37	0.96
25615--25886	124	2.3	118	85	6	350	23	18	16	41	1.90
25833--25924	36	2.6	36	94	0	157	18	20	10	50	1.77
25868--25924	17	3.2	17	69	26	55	19	22	8	49	1.76
25868--26520	113	5.8	109	81	7	713	29	18	13	38	1.88
25866--26483	338	1.8	333	95	1	1110	29	18	13	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25868--26523	225	2.9	221	82	6	795	30	17	13	38	1.89
27225--27568	114	3.0	115	95	0	593	29	20	15	34	1.94
28832--28897	1	66.0	1	75	0	60	0	10	1	87	0.60
28831--28900	9	8.4	8	87	12	81	0	12	1	85	0.66
28833--28886	7	7.9	7	87	8	76	0	11	0	88	0.50
28832--28897	10	6.5	10	83	10	89	0	10	1	87	0.60
36233--36264	15	2.1	15	94	0	55	46	6	18	28	1.73
40094--40145	28	2.0	25	81	11	59	53	0	3	42	1.19
40104--40158	23	2.3	26	81	12	73	54	0	3	41	1.18
40208--40252	22	2.0	22	86	8	63	57	0	0	42	0.98
40373--40440	2	37.5	2	72	19	60	52	0	0	47	1.00
41766--41822	3	19.0	3	85	7	80	61	0	0	38	0.96
43998--44029	16	2.1	15	94	5	55	21	0	28	50	1.49
46018--46109	45	2.0	47	93	4	161	29	9	22	38	1.86
55763--55847	25	3.3	25	78	6	71	74	0	17	8	1.06
55743--55809	25	2.7	24	79	9	73	71	0	20	7	1.10
55789--55847	13	4.4	14	77	14	61	76	0	15	8	1.01
55797--55842	16	3.2	14	87	9	58	76	0	17	6	1.00
57166--57718	51	10.7	51	92	2	820	29	15	26	28	1.96
57583--57773	56	3.5	56	83	6	203	30	15	22	31	1.95
57175--57797	51	11.9	54	88	6	266	29	15	26	28	1.96
57584--57808	110	2.0	110	80	9	246	29	16	23	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58799--58830	16	2.1	15	94	5	55	21	0	28	50	1.49
64418--64451	15	2.4	14	90	9	52	73	8	8	8	1.25
68326--68350	2	12.5	2	100	0	50	48	0	52	0	1.00
68922--68959	2	19.0	2	100	0	76	50	0	0	50	1.00
71727--71771	21	2.1	21	87	0	63	33	28	15	22	1.95
73917--74120	55	3.7	55	89	1	293	27	21	20	30	1.98
80228--80277	21	2.4	21	83	6	66	34	26	12	28	1.92
80796--80943	54	2.7	55	85	6	210	28	22	18	31	1.97
83553--83590	19	2.0	19	85	10	51	31	23	26	18	1.97
84295--84334	2	20.0	2	100	0	80	50	0	0	50	1.00
86982--87097	55	2.1	55	83	3	144	43	11	8	36	1.71
91220--91253	7	4.9	7	96	0	59	23	44	0	32	1.54
100482--100518	6	6.0	6	90	3	56	2	16	64	16	1.40
101602--101849	130	1.9	130	93	0	424	35	14	13	36	1.85
101616--101880	130	2.0	129	81	4	309	38	12	13	34	1.83
102175--102237	28	2.3	27	78	8	63	46	1	3	49	1.27
102317--102350	16	2.0	18	88	11	54	64	5	2	26	1.30
102473--102515	21	2.0	21	95	0	77	39	0	11	48	1.40
102484--102569	35	2.5	35	86	0	109	37	1	19	41	1.59
103488--103550	30	2.1	30	88	8	94	31	6	0	61	1.21
104295--104331	16	2.3	17	81	13	51	54	18	13	13	1.71
104928--104978	23	2.3	24	75	25	58	52	0	1	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105764--106067	163	1.9	162	86	0	437	26	14	12	46	1.80
105961--106284	163	2.0	163	90	2	508	28	14	12	44	1.81
106125--106540	182	2.3	181	93	0	706	27	16	13	42	1.85
106416--106876	111	4.1	111	92	0	742	24	14	14	45	1.83
106416--106876	223	2.1	223	92	0	762	24	14	14	45	1.83
113428--113474	19	2.4	19	96	3	85	48	4	17	29	1.65
122065--122145	36	2.2	37	91	4	130	46	18	3	30	1.66
126648--126728	36	2.2	37	89	4	121	45	17	4	32	1.69
134105--134173	31	2.2	31	89	5	104	43	5	5	44	1.52
134502--134541	16	2.5	16	91	0	62	27	35	10	27	1.89
135181--135570	193	2.0	195	98	1	766	36	20	25	17	1.94
138112--138204	37	2.5	37	85	0	114	44	11	10	33	1.76
138705--138803	24	4.3	23	72	19	82	27	6	1	65	1.22
138701--138807	15	7.3	15	69	21	59	27	5	0	66	1.20
138827--138867	11	3.6	11	87	6	55	24	4	4	65	1.32
139085--139135	2	25.5	2	100	0	102	49	0	0	50	1.00
139361--139490	12	11.3	11	67	19	52	21	4	3	70	1.19
143006--143060	22	2.5	22	96	0	101	36	25	12	25	1.91
143884--145363	106	14.0	106	91	1	2201	34	24	18	22	1.96
146094--146198	37	2.8	37	82	0	129	40	13	14	31	1.84
146734--146897	61	2.7	58	73	23	142	22	7	1	68	1.23
146819--146942	22	5.5	22	67	22	64	25	4	2	67	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147139--147171	2	16.5	2	100	0	66	48	0	0	51	1.00
147436--147464	2	14.5	2	100	0	58	48	0	0	51	1.00
147471--147547	18	4.2	18	71	17	50	18	2	3	75	1.07
147481--147534	24	2.3	23	81	9	56	14	3	3	77	1.04
150712--150757	23	2.0	24	83	12	60	39	30	6	23	1.80
153569--153663	35	3.0	30	73	15	75	47	6	3	43	1.44
161197--161221	2	12.5	2	100	0	50	48	0	0	52	1.00
167453--167528	2	38.0	2	100	0	152	50	0	0	50	1.00
167528--167563	2	18.0	2	100	0	72	0	0	50	50	1.00
170030--170090	24	2.5	24	84	10	70	39	9	4	45	1.59
171910--172044	68	2.0	67	85	1	180	40	13	11	35	1.80
175630--175872	98	2.4	99	80	8	283	21	18	24	36	1.95
177020--177055	7	5.1	7	90	9	56	0	13	0	86	0.58
177006--177049	15	2.7	16	89	10	63	0	15	4	79	0.89
177099--177133	6	5.8	6	87	12	54	0	11	0	88	0.51
177099--177134	18	2.1	18	94	5	65	0	11	0	88	0.50
178176--178526	172	2.0	172	99	0	693	20	23	15	40	1.91
190517--190726	65	3.3	63	80	12	223	30	23	18	26	1.98
190698--190746	19	2.6	19	84	9	57	24	28	20	26	1.99
195603--195697	44	2.2	44	87	7	133	27	26	22	24	2.00
195603--195697	23	4.4	21	77	9	86	27	26	22	24	2.00
195622--195702	23	3.7	23	77	8	96	25	25	24	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195621--195720	43	2.3	42	80	8	112	27	26	25	22	2.00
197241--197283	21	2.0	21	82	8	52	9	39	13	37	1.78
197612--197640	14	2.0	15	93	6	51	6	3	27	62	1.37
198320--198426	46	2.4	45	82	4	126	34	18	17	28	1.94
198364--198488	64	1.9	64	83	4	162	30	20	20	28	1.98
198466--198508	19	2.4	19	84	7	54	23	27	20	27	1.99

Tables:   1

The End!