Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001221.1 Hibiscus syriacus cultivar Beakdansim tig00002410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59697

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
256--321
2
36.0
2
77
22
74
51
0
1
46
1.10
255--321
11
6.5
11
85
11
97
52
0
1
46
1.09
256--321
13
5.2
13
81
18
77
51
0
1
46
1.10
1331--1439
31
3.5
31
77
5
105
47
7
1
43
1.42
2941--2983
22
2.0
22
90
0
68
44
18
16
20
1.87
3650--3679
13
2.2
14
94
5
53
46
23
0
30
1.52
4662--4703
2
21.0
2
100
0
84
50
0
0
50
1.00
5041--5078
20
1.9
20
89
10
60
21
34
31
13
1.91
5099--5140
21
2.0
21
86
9
59
35
28
11
23
1.91
7516--7552
16
2.2
18
85
9
51
18
18
0
62
1.34
11466--11504
20
2.0
20
90
10
62
23
33
30
12
1.92
11525--11566
21
2.0
22
86
9
61
33
28
14
23
1.94
12504--12546
2
21.5
2
100
0
86
51
0
0
48
1.00
15201--15273
2
35.5
2
82
10
85
50
2
1
45
1.24
28465--28504
20
2.1
19
85
4
53
35
7
35
22
1.82
30658--30705
19
2.5
19
86
3
60
33
29
16
20
1.95
30920--30967
22
2.2
22
96
0
87
20
41
14
22
1.89
31340--31393
20
2.7
19
83
8
72
14
16
22
46
1.84
33198--33243
4
11.5
4
80
0
56
26
2
4
67
1.21
33393--33505
21
5.4
21
83
5
97
21
31
20
26
1.98
33408--33525
41
2.8
41
83
8
141
20
36
19
23
1.95
33412--33525
21
5.5
20
84
6
129
20
36
20
22
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38422--38459
16
2.5
15
84
12
51
65
0
5
28
1.14
38618--38672
20
2.8
20
81
10
67
34
7
25
32
1.83
43906--43975
19
3.7
19
98
0
131
31
27
21
20
1.98
44043--44225
21
8.6
22
76
14
163
19
19
22
37
1.94
44049--44232
42
4.3
42
90
2
296
20
19
22
36
1.95
44058--44225
86
2.0
86
96
0
309
19
19
22
38
1.94
44847--44883
6
6.5
6
96
3
60
0
16
54
29
1.43
44981--45178
21
9.5
21
78
14
187
24
22
23
29
1.99
45044--45116
20
3.6
20
78
10
94
23
23
19
34
1.97
45022--45160
41
3.4
41
89
5
183
24
23
20
31
1.98
45368--45425
21
2.8
20
79
7
62
67
3
5
24
1.27
45368--45425
10
5.6
10
80
8
62
67
3
5
24
1.27
46598--46631
7
4.9
7
92
0
59
67
0
0
32
0.91
46712--46749
10
3.6
11
82
10
53
21
0
5
73
1.02
48209--48242
15
2.3
15
89
0
50
35
32
17
14
1.91
48327--48407
29
2.8
29
96
3
146
17
22
16
44
1.86
55108--55163
22
2.5
22
94
0
85
23
25
23
28
1.99
55698--55854
64
2.5
63
79
10
176
26
19
19
35
1.95
57782--57820
18
2.2
18
85
0
51
7
25
30
35
1.84

Tables:   1

The End!