Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001222.1 Hibiscus syriacus cultivar Beakdansim tig00002411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78657

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7833--8106
128
2.1
128
85
2
363
20
19
20
39
1.92
9956--9989
18
2.0
17
88
11
52
58
2
5
32
1.37
10964--10996
2
16.5
2
100
0
66
51
0
0
48
1.00
13890--14009
51
2.4
50
84
5
152
16
33
30
20
1.94
14119--14156
20
1.9
19
89
5
58
31
23
0
44
1.54
14169--14214
14
3.0
16
75
18
53
32
2
0
65
1.05
16227--16269
3
14.3
3
90
0
68
32
27
34
4
1.78
20031--20154
50
2.5
50
82
4
169
26
20
25
26
1.99
20166--20284
51
2.4
51
81
5
143
18
30
33
17
1.94
25729--25859
23
5.7
23
79
7
113
36
17
19
26
1.94
25748--25845
12
8.4
12
85
4
121
40
19
17
22
1.91
25729--25839
12
9.6
11
80
6
105
36
18
19
26
1.94
25749--25859
35
3.2
34
88
2
150
38
18
18
24
1.93
36192--36217
2
13.0
2
100
0
52
50
0
0
50
1.00
36045--36343
164
1.8
163
96
0
553
29
14
19
36
1.91
36322--36366
23
2.0
23
90
0
72
22
26
26
24
2.00
42467--42504
20
1.9
20
88
0
58
23
34
31
10
1.89
42977--43292
150
2.1
150
95
2
566
26
17
21
34
1.95
43260--43304
23
2.0
23
90
0
72
22
26
26
24
2.00
49648--50170
288
1.8
288
100
0
1046
24
15
26
34
1.94
51516--51582
22
3.0
22
100
0
134
26
26
26
19
1.99
51802--51860
30
1.9
31
89
3
93
33
23
6
35
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51875--51946
29
2.5
29
93
0
117
38
12
9
38
1.76
52249--52401
68
2.2
68
88
4
220
17
28
27
26
1.98
52249--52423
68
2.6
67
84
7
203
17
27
26
28
1.98
58468--58534
22
3.0
22
100
0
134
26
26
26
19
1.99
58754--58812
30
1.9
31
89
3
93
33
23
6
35
1.82
58827--58898
29
2.5
29
93
0
117
38
12
9
38
1.76
59217--59355
68
2.1
68
89
4
210
17
29
25
27
1.98
59218--59377
68
2.4
67
85
7
200
18
28
25
28
1.98
66183--66215
14
2.4
14
100
0
66
15
30
15
39
1.88
70436--70572
45
3.1
43
76
11
125
53
5
15
26
1.62
70447--70723
44
6.4
42
79
9
236
50
4
19
25
1.65
70511--70893
43
8.9
42
76
8
202
52
4
16
26
1.63
70446--70888
172
2.6
171
79
8
438
52
4
16
26
1.63
70824--70894
13
5.2
13
72
12
61
60
2
9
26
1.42
78159--78198
20
2.0
20
90
0
62
12
22
15
50
1.77

Tables:   1

The End!