genome.fa.s1223.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001223.1 Hibiscus syriacus cultivar Beakdansim tig00002412_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67200

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4663--4751	31	3.2	26	73	17	79	17	39	22	20	1.92
4659--4727	31	2.2	31	84	0	93	18	43	20	17	1.88
4704--4736	13	2.5	13	95	0	57	18	36	24	21	1.95
7227--7317	24	3.8	24	83	2	121	28	16	17	37	1.92
7227--7317	47	1.9	48	88	2	139	28	16	17	37	1.92
15041--15078	20	1.9	20	94	0	67	23	28	15	31	1.96
25631--25676	22	2.1	22	84	8	58	23	4	10	60	1.47
27512--27564	21	2.5	21	84	0	70	20	26	18	33	1.96
27782--27843	18	3.0	22	70	18	60	27	38	14	19	1.90
28169--28241	33	2.2	34	85	7	96	15	20	24	39	1.91
28213--28261	20	2.5	20	89	0	71	18	18	26	36	1.94
28229--28283	20	2.8	20	88	0	74	12	16	21	49	1.79
28248--28291	20	2.2	20	83	0	52	15	13	18	52	1.75
30154--30219	20	3.6	20	67	23	63	39	22	21	16	1.92
30157--30238	34	2.4	34	93	0	137	42	20	21	14	1.88
30190--30255	19	3.7	18	73	21	59	42	19	21	16	1.89
30264--30364	20	5.3	20	78	13	106	18	19	21	39	1.92
30245--30365	54	2.2	54	91	0	188	17	21	21	39	1.92
30318--30374	20	2.8	20	89	0	60	15	17	22	43	1.87
32333--32368	14	2.6	14	90	0	54	30	0	22	47	1.52
32544--32614	33	2.1	34	92	2	117	11	23	19	45	1.83
32559--32639	33	2.4	33	83	2	90	13	23	20	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32617--32684	20	3.4	20	91	4	111	19	20	25	35	1.96
35023--35076	24	2.2	24	93	0	90	40	20	18	20	1.91
35938--36104	20	8.3	20	88	5	248	22	18	19	39	1.92
35917--36088	40	4.3	39	83	12	174	23	18	19	38	1.93
36101--36146	21	2.2	21	84	0	56	36	15	28	19	1.92
39276--39909	127	5.0	127	95	0	1090	22	23	20	33	1.97
40346--40446	34	3.0	34	82	2	141	39	2	3	53	1.35
40970--41039	21	3.3	20	90	5	95	20	24	35	20	1.96
42793--42824	16	1.9	17	93	6	57	68	6	3	21	1.26
42813--42908	30	3.3	30	81	5	90	59	0	0	40	0.97
43118--43261	60	2.4	60	81	10	168	27	29	24	18	1.98
44661--44706	23	2.0	23	84	16	60	52	2	0	45	1.13
45655--45694	21	1.9	21	89	0	62	47	0	7	45	1.31
56488--56519	10	3.3	10	91	8	57	37	9	9	43	1.69
56969--57027	24	2.5	24	97	0	109	33	22	25	18	1.96
57659--57688	15	2.0	15	93	0	51	43	3	26	26	1.70
57896--57930	18	1.9	18	94	0	61	20	22	31	25	1.98

Tables:   1

The End!