Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001224.1 Hibiscus syriacus cultivar Beakdansim tig00002413_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46405

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2577--2609
2
16.5
2
100
0
66
48
0
0
51
1.00
3877--3922
20
2.3
19
78
10
56
56
10
13
19
1.66
6039--6071
15
2.2
15
100
0
66
18
6
63
12
1.48
6153--6205
21
2.5
21
96
0
97
43
7
33
15
1.74
6474--6512
18
2.2
18
85
0
51
69
2
12
15
1.30
8396--9735
200
6.7
201
93
0
2258
36
14
18
31
1.90
8396--9735
401
3.3
402
93
1
2267
36
14
18
31
1.90
16213--16354
74
1.9
74
95
0
257
31
14
12
40
1.84
17457--17501
16
2.8
16
96
0
81
33
4
26
35
1.77
21503--21573
36
2.0
35
94
2
124
32
5
15
46
1.69
27533--27580
23
2.1
23
88
0
69
35
12
18
33
1.89
30196--30901
184
3.9
184
97
1
1323
34
15
15
34
1.89
30893--30945
22
2.4
22
84
6
63
35
9
11
43
1.73
32357--32430
3
24.7
3
78
0
76
25
33
5
35
1.79
32365--32455
42
2.2
42
87
0
128
21
32
7
37
1.82
32370--32437
9
7.6
9
73
6
57
23
33
7
35
1.83
32361--32458
6
16.3
6
76
8
56
21
32
7
38
1.81
33897--35304
198
7.1
198
96
2
2536
31
15
14
38
1.88
35386--35426
19
2.2
19
90
0
64
58
9
2
29
1.43
37215--37280
33
2.0
33
87
0
96
24
45
1
28
1.62
39570--39612
20
2.3
18
82
17
61
20
16
9
53
1.70
39575--39621
20
2.3
20
89
10
78
19
17
8
55
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39742--39787
20
2.3
20
89
10
76
17
17
10
54
1.70
39854--40294
227
2.0
221
91
4
715
39
7
8
45
1.62
41270--41316
21
2.2
21
96
0
85
44
21
0
34
1.52

Tables:   1

The End!