genome.fa.s1226.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001226.1 Hibiscus syriacus cultivar Beakdansim tig00002415_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75275

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1327--1364	2	19.0	2	89	10	60	47	2	0	50	1.15
2728--2770	14	3.2	13	83	3	50	32	6	27	32	1.84
2752--2789	20	1.9	20	89	10	60	36	13	23	26	1.91
2928--2971	22	2.1	22	87	8	65	34	22	9	34	1.86
3019--3101	20	4.0	20	82	4	94	34	19	22	22	1.96
6840--6894	28	2.0	28	89	7	85	49	10	16	23	1.77
7091--7148	26	2.2	26	87	3	80	13	8	29	48	1.73
10589--10633	19	2.4	19	84	0	63	46	17	0	35	1.49
21970--21999	2	15.0	2	100	0	60	50	0	0	50	1.00
22500--22546	24	2.0	24	83	8	60	46	0	4	48	1.21
50580--51028	223	2.0	223	96	0	828	28	25	19	26	1.99
52925--53062	73	1.9	73	95	3	251	36	18	12	32	1.88
62480--62510	16	1.9	16	93	0	53	16	38	12	32	1.86
62950--63211	53	4.9	53	82	3	287	22	25	20	30	1.98
63344--63370	10	2.7	10	100	0	54	33	11	22	33	1.89
63754--63778	13	1.9	13	100	0	50	24	20	24	32	1.98
63674--63859	93	2.0	93	90	2	293	29	20	17	33	1.95
63824--63909	42	2.0	42	90	0	136	32	19	19	27	1.97
71793--71947	84	1.8	84	81	2	195	27	20	22	29	1.99
72022--72090	36	1.9	36	93	0	120	42	14	20	23	1.89
72196--72265	35	2.0	35	82	0	86	38	15	18	27	1.91
72165--72519	102	3.5	101	86	4	423	39	14	17	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72285--72357	37	2.0	37	88	0	110	38	15	20	26	1.92
72431--72584	65	2.4	65	83	3	186	42	12	16	27	1.84
72626--72753	65	2.0	65	84	6	170	39	12	17	29	1.87
72314--72835	167	3.2	166	92	2	845	40	13	17	28	1.87
72971--73304	106	3.2	106	85	1	411	23	17	23	36	1.95
73880--73966	32	2.8	32	84	10	117	32	20	16	31	1.94
74876--75011	68	2.0	68	94	2	238	26	13	21	38	1.91
75072--75128	29	2.0	29	83	13	73	5	14	3	77	1.08

Tables:   1

The End!