Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001227.1 Hibiscus syriacus cultivar Beakdansim tig00002416_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56878

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4352--4388
2
18.5
2
100
0
74
48
0
0
51
1.00
5829--5870
14
2.8
16
82
17
63
30
4
0
64
1.14
5939--5984
2
23.0
2
79
16
51
45
4
0
50
1.21
5940--5996
25
2.2
26
90
3
80
43
10
0
45
1.38
6097--6149
27
2.0
27
88
7
81
13
11
0
75
1.05
6208--6247
12
3.2
12
86
6
53
20
2
2
75
1.04
6224--6259
18
2.0
18
94
0
63
13
0
5
80
0.88
6213--6255
12
3.5
12
87
6
59
16
0
4
79
0.90
10029--10289
95
2.7
95
86
3
346
33
17
17
31
1.94
11532--11823
84
3.5
84
89
1
433
31
25
20
22
1.98
11959--12085
43
3.0
43
89
0
191
34
29
12
22
1.91
14124--14165
14
2.8
16
82
17
63
30
4
0
64
1.14
14227--14311
2
41.5
2
87
6
118
45
3
2
48
1.32
14413--14476
4
15.2
4
74
18
51
18
4
0
76
0.95
14415--14480
13
5.2
13
71
16
50
16
4
0
78
0.90
14419--14477
18
3.5
17
78
21
61
18
5
0
76
0.97
14530--14591
21
3.0
21
77
15
58
17
4
1
75
1.05
16966--17018
14
3.7
14
76
14
63
22
20
18
37
1.94
19278--19309
7
4.4
7
96
4
55
71
0
0
28
0.86
19392--19482
37
2.5
36
87
7
130
76
5
7
9
1.14
19451--19525
24
2.9
26
77
20
86
77
2
8
12
1.08
19502--19666
15
10.7
15
69
17
79
72
1
4
20
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19541--19712
25
6.8
25
73
16
92
74
1
3
20
1.03
19544--19636
27
3.5
26
78
12
84
73
0
2
24
0.95
19542--19705
63
2.6
60
75
15
147
74
1
3
20
1.04
19477--19713
9
24.6
9
65
19
54
73
2
5
18
1.12
19808--19865
27
2.1
27
90
0
89
60
5
12
22
1.51
20840--20873
16
2.1
16
89
10
52
70
0
0
29
0.87
20895--20944
26
2.0
25
84
4
64
56
8
0
36
1.29
20916--21272
37
9.8
37
86
7
427
44
6
3
44
1.48
21223--21284
26
2.5
26
75
12
67
45
6
3
45
1.45
21221--21272
26
2.0
26
84
3
68
46
5
1
46
1.38
21279--21317
17
2.2
18
86
4
53
61
2
0
35
1.10
24724--24789
29
2.2
31
86
10
102
21
27
22
28
1.99
24810--24848
17
2.3
17
95
0
69
20
46
20
12
1.83
28957--29000
9
4.8
9
80
5
52
18
25
29
27
1.98
28966--29004
19
2.1
19
100
0
78
17
25
30
25
1.97
28967--29006
9
4.3
9
84
6
53
15
30
30
25
1.95
29008--29045
12
3.3
12
78
14
53
21
42
23
13
1.88
30849--31005
78
2.0
78
98
0
305
33
20
21
24
1.97
39064--39171
56
1.9
56
84
5
146
29
23
20
26
1.99
40523--40590
20
3.4
20
88
6
93
48
8
13
29
1.72
41827--41895
30
2.2
30
85
15
95
34
5
17
42
1.73
41836--41895
30
2.0
30
93
6
104
33
6
16
43
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41973--42029
21
2.7
21
91
0
96
21
36
19
22
1.95
42014--42072
22
2.8
20
78
12
66
25
28
18
27
1.98
42092--42159
20
3.3
20
85
4
100
17
27
25
29
1.97
42092--42174
41
2.0
41
88
4
123
20
27
25
26
1.99
42520--42589
34
2.1
32
81
5
77
32
14
28
24
1.94
43785--43823
18
2.0
20
85
9
55
53
12
2
30
1.52
45507--45532
2
13.0
2
100
0
52
50
0
0
50
1.00
45978--46182
65
3.2
64
80
8
236
30
23
19
26
1.98
49704--49763
29
2.1
29
83
0
75
51
0
5
43
1.23
49834--49909
28
2.8
28
86
4
102
67
3
2
26
1.22

Tables:   1

The End!