genome.fa.s1228.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001228.1 Hibiscus syriacus cultivar Beakdansim tig00002417_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111923

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7106--7131	3	8.7	3	100	0	52	0	30	0	69	0.89
7993--8066	23	3.2	24	86	3	98	59	17	12	10	1.60
9107--9157	20	2.5	20	80	0	57	41	19	21	17	1.91
9145--9240	20	4.7	19	72	11	66	37	22	16	22	1.94
9144--9240	41	2.4	41	85	0	140	38	22	16	22	1.93
9407--9450	22	2.0	22	95	0	79	20	45	15	18	1.85
9712--9770	20	3.0	20	84	0	64	16	16	22	44	1.87
9907--9961	25	2.2	24	78	15	58	20	9	18	52	1.71
11597--11642	20	2.3	20	88	0	65	36	26	21	15	1.93
11636--11718	19	4.6	19	79	14	104	46	18	19	15	1.83
11746--11804	19	3.4	19	73	22	74	13	18	20	47	1.82
11730--11788	14	3.9	14	74	20	55	11	16	22	49	1.78
11725--11804	33	2.4	33	95	0	142	12	18	21	47	1.81
11789--11839	20	2.6	19	84	9	66	15	25	21	37	1.93
12216--12285	21	3.3	20	72	7	59	24	41	15	18	1.89
12205--12297	42	2.2	42	90	0	141	22	43	13	20	1.87
13707--13745	14	2.8	14	84	0	51	35	0	17	46	1.49
13872--13925	14	3.5	14	77	22	63	48	20	20	11	1.80
13882--13918	19	1.9	19	88	0	56	51	16	21	10	1.74
13949--14044	20	4.8	20	77	10	97	17	19	20	41	1.90
13949--14044	40	2.4	41	80	5	115	17	19	20	41	1.90
14258--14307	20	2.5	20	76	0	64	22	16	22	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14584--14615	12	2.8	12	95	4	57	15	37	6	40	1.73
15172--15225	24	2.2	24	90	0	81	22	16	20	40	1.91
15400--15436	12	3.1	12	100	0	74	72	0	27	0	0.84
16248--16314	21	3.2	21	68	4	55	20	19	35	23	1.95
16248--16370	42	2.9	41	79	7	104	24	16	36	22	1.94
16588--16772	91	2.0	93	91	6	306	47	18	11	21	1.81
18455--18576	20	6.8	19	69	20	84	43	20	23	12	1.86
18504--18559	14	3.6	14	74	21	58	39	25	25	10	1.87
18480--18576	33	2.9	33	95	1	167	41	22	24	11	1.87
18577--18643	19	3.5	19	81	2	80	10	14	25	49	1.76
19158--19309	20	7.6	20	88	4	78	21	20	20	38	1.94
19176--19409	41	5.7	42	76	8	207	24	20	18	36	1.95
19176--19409	20	11.5	21	81	6	216	24	20	18	36	1.95
19259--19474	103	2.1	102	85	4	292	28	19	21	30	1.98
19402--19454	21	2.5	22	78	6	65	35	16	26	20	1.94
22187--22224	8	4.3	9	81	18	53	55	0	0	44	0.99
29329--29440	35	3.2	34	86	5	143	42	21	0	34	1.59
30320--30431	35	3.2	34	89	2	161	33	0	23	42	1.54
36487--36551	14	4.3	15	75	19	64	64	1	1	32	1.12
39367--39406	18	2.0	20	86	13	57	75	5	5	15	1.15
41379--41415	20	1.9	19	89	10	58	24	21	5	48	1.71
44977--45021	23	1.9	23	82	13	56	55	4	2	37	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50735--50777	14	2.9	15	79	6	61	41	6	20	30	1.79
51063--51124	23	2.7	23	79	2	61	48	1	1	48	1.21
51110--51263	27	5.8	26	69	20	88	52	1	0	45	1.12
51109--51252	52	2.8	50	78	16	134	52	2	0	45	1.12
54555--54599	20	2.2	20	84	11	56	33	11	15	40	1.83
57844--58418	289	2.0	286	97	1	1087	23	15	16	45	1.85
63900--63938	6	6.5	6	84	0	51	33	2	2	61	1.23
71006--71045	21	1.9	21	89	0	62	32	12	25	30	1.92
81646--81728	42	2.0	42	90	0	130	25	19	21	33	1.97
81691--81901	80	2.6	80	92	0	332	31	18	21	28	1.96
81861--81939	42	1.9	41	92	2	131	21	18	24	35	1.96
82315--82546	53	4.4	53	84	0	293	27	20	28	24	1.99
82316--82590	53	5.2	53	81	4	153	28	20	27	24	1.99
90595--90714	35	3.3	36	87	6	163	43	18	5	33	1.72
90643--90706	20	3.4	20	66	29	59	45	18	4	31	1.70
94795--94819	12	2.1	12	100	0	50	40	16	16	28	1.89
95202--95321	35	3.3	36	86	6	163	43	18	5	33	1.72
95250--95313	20	3.4	20	68	29	59	45	17	4	32	1.69
105807--105849	22	2.0	22	95	0	77	39	11	11	37	1.78
105922--105986	24	3.0	23	84	13	84	49	9	0	41	1.35
111694--111736	22	1.9	22	85	4	59	39	6	2	51	1.42

Tables:   1

The End!