genome.fa.s1229.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001229.1 Hibiscus syriacus cultivar Beakdansim tig00002418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77831

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2729--2772	2	22.5	2	90	4	72	47	0	2	50	1.13
2825--2898	40	1.9	38	81	8	87	47	2	5	44	1.40
2800--2898	49	2.1	49	81	11	116	47	3	5	44	1.40
2845--2980	37	3.6	36	80	12	139	42	4	5	47	1.48
2846--2982	39	3.5	39	78	10	138	41	4	5	48	1.47
3009--3083	37	2.0	37	89	7	116	50	2	5	41	1.39
3036--3204	38	4.4	37	75	11	128	49	2	4	43	1.39
3208--3238	14	2.2	14	94	0	53	22	0	0	77	0.77
4400--4460	2	30.5	2	100	0	122	50	0	0	49	1.00
9349--10470	333	3.4	333	90	1	1653	30	24	20	25	1.99
9374--10555	248	4.8	248	80	5	1077	30	24	20	25	1.99
9374--10547	164	7.1	164	76	11	831	29	24	20	25	1.99
11153--11324	36	4.7	35	78	14	168	44	3	6	45	1.46
11316--11349	15	2.2	16	89	5	52	47	2	2	47	1.32
11331--11547	40	5.4	41	79	10	209	45	2	5	46	1.39
11473--11587	38	3.0	37	76	11	115	45	3	4	46	1.40
11579--11609	13	2.4	13	100	0	62	9	12	0	77	0.99
13040--13064	12	2.1	12	100	0	50	40	0	0	60	0.97
14198--14240	21	2.0	22	95	4	79	46	11	13	27	1.78
28462--28516	17	3.3	17	75	14	51	52	0	3	43	1.18
31051--31095	23	2.0	23	86	0	63	33	26	22	17	1.96
37833--37876	23	1.9	23	85	0	61	34	25	22	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37841--37885	23	2.0	23	86	0	63	28	26	24	20	1.99
40759--40802	16	2.8	16	100	0	88	43	13	0	43	1.44
40806--40840	2	17.5	2	100	0	70	51	0	0	48	1.00
41288--41841	82	6.6	82	77	6	495	37	9	14	38	1.79
41390--41563	91	1.9	91	83	6	228	37	10	13	38	1.80
41288--41863	164	3.5	163	80	8	631	36	9	14	38	1.79
47606--47663	28	2.1	28	83	6	73	36	10	1	51	1.46
47623--47663	10	4.3	10	75	12	50	31	9	2	56	1.45
57036--57082	21	2.2	21	92	0	76	34	19	4	42	1.70
57058--57146	32	2.8	32	94	0	151	33	17	6	41	1.76
57122--57211	21	4.3	21	84	0	108	36	20	1	42	1.59
60371--60401	16	1.9	16	93	0	53	32	12	38	16	1.86
66902--66952	21	2.4	21	80	0	57	78	3	15	1	0.99
66915--66953	21	1.9	20	89	5	60	76	5	12	5	1.11
67025--67162	69	2.0	69	97	0	258	38	21	13	26	1.91
68087--68175	32	2.8	31	83	6	106	30	15	22	31	1.95
68753--69055	106	2.9	106	87	0	372	35	24	16	23	1.94
69305--69461	65	2.4	65	81	4	192	28	19	12	40	1.87
69223--69747	167	3.1	167	94	0	874	28	17	12	40	1.86
69372--69563	102	1.9	102	82	4	244	26	16	13	43	1.85
69474--69628	65	2.4	65	83	2	186	27	16	12	43	1.84
69523--69897	102	3.7	101	86	1	446	28	17	13	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69704--69776	37	2.0	37	88	0	110	26	20	15	38	1.92
69792--69866	36	2.1	36	84	0	96	25	20	14	40	1.90
69973--70041	36	1.9	36	93	0	120	23	20	14	42	1.89
77576--77634	26	2.3	27	88	5	86	27	16	11	44	1.83

Tables:   1

The End!