genome.fa.s123.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000123.1 Hibiscus syriacus cultivar Beakdansim tig00000222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85337

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2023--2178	42	3.8	42	84	5	185	25	39	12	22	1.90
2278--2468	21	9.1	21	70	11	122	20	10	34	33	1.88
2278--2450	63	2.7	62	80	7	172	21	10	34	34	1.87
2577--2622	4	11.5	4	80	0	56	26	2	4	67	1.21
2756--2846	21	4.3	21	79	5	85	21	36	14	27	1.92
4709--4922	20	11.4	20	69	14	132	42	21	11	23	1.86
4684--4882	54	3.7	54	75	3	161	43	22	11	22	1.85
4709--4901	40	5.2	40	69	15	151	41	22	12	23	1.87
4684--4964	74	3.8	74	80	7	320	44	20	12	22	1.84
4980--5032	20	2.7	20	88	5	81	22	13	20	43	1.86
5302--5337	18	2.0	18	88	0	54	22	2	19	55	1.56
7502--7555	24	2.2	24	93	0	90	44	20	14	20	1.86
8479--8608	20	6.5	20	73	11	88	38	10	20	30	1.86
8502--8588	39	2.2	40	85	2	113	37	12	19	29	1.89
8593--8693	21	5.0	19	72	9	76	25	10	20	42	1.85
8502--8693	20	9.5	19	68	10	87	32	11	20	35	1.88
12814--12937	44	2.8	43	85	4	167	42	11	17	28	1.84
15657--15776	49	2.4	49	91	0	186	46	5	8	39	1.58
24576--24601	2	13.0	2	100	0	52	50	0	0	50	1.00
25696--25745	26	1.9	26	84	8	66	58	10	2	30	1.42
27192--27244	20	2.7	20	85	5	63	45	20	18	15	1.85
27253--27418	20	8.6	20	80	8	128	37	22	21	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27253--27416	40	4.2	39	80	12	160	37	22	20	19	1.95
27292--27394	54	1.9	54	88	4	154	40	22	20	16	1.91
27230--27422	20	9.9	19	71	17	96	36	22	20	20	1.95
39366--39405	21	1.9	21	85	10	55	35	10	2	52	1.48
42730--42766	14	2.6	14	91	4	56	51	21	21	5	1.68
44932--45021	33	2.7	34	78	3	92	42	22	21	14	1.88
44976--45003	14	2.0	14	100	0	56	42	21	21	14	1.88
44977--45010	14	2.4	14	90	0	50	44	20	23	11	1.84
44970--45075	19	6.1	19	68	21	79	44	19	22	13	1.85
44961--45073	53	2.2	52	85	1	154	46	19	20	14	1.84
45019--45096	33	2.4	33	95	0	138	44	17	24	12	1.84
45235--45271	14	2.6	14	82	0	56	43	21	0	35	1.53
46621--46726	42	2.5	41	80	6	97	25	17	33	22	1.96
48699--48825	19	6.8	19	75	13	122	46	18	22	13	1.83
48863--48921	21	2.9	21	82	7	77	11	20	16	50	1.76
49168--49220	22	2.4	22	75	6	54	24	13	41	20	1.88
49373--49540	40	4.1	41	77	6	148	20	17	22	38	1.93
49373--49532	60	2.6	60	82	4	196	21	16	22	38	1.93
49373--49540	20	8.3	21	76	10	120	20	17	22	38	1.93
51292--51341	2	25.0	2	100	0	100	50	0	0	50	1.00
52730--52852	51	2.4	52	93	1	203	41	26	19	13	1.87
55586--55614	13	2.1	14	93	6	51	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60276--60300	7	3.6	7	100	0	50	24	0	0	76	0.80
60671--60768	51	2.0	50	82	8	119	23	29	28	18	1.98
64666--64722	6	9.5	6	78	0	51	15	35	17	31	1.92
66592--66813	111	2.0	111	93	0	381	44	9	8	37	1.67
67103--67215	50	2.3	50	81	3	120	24	26	31	16	1.96
71797--71926	63	2.1	63	100	0	260	22	23	26	27	2.00
74527--74552	2	13.0	2	100	0	52	50	0	50	0	1.00
79443--79474	15	2.1	15	100	0	64	18	40	18	21	1.91
79859--79917	25	2.3	25	79	2	64	52	1	0	45	1.10
80998--81046	25	2.0	25	91	0	80	32	8	16	42	1.77
81657--81778	7	18.0	7	76	17	82	36	0	4	58	1.20
81658--81778	19	6.4	19	77	15	101	36	0	4	58	1.20
81737--81784	3	15.3	3	87	8	69	31	0	0	68	0.90
83121--83161	9	4.6	9	80	19	50	26	0	0	73	0.84
83200--83284	2	45.0	2	87	11	117	48	0	0	51	1.00
83373--83433	27	2.4	25	81	10	77	45	1	4	47	1.34
83384--83438	27	2.0	27	92	0	92	41	3	5	49	1.43
83398--83658	38	7.3	36	80	16	153	43	5	5	44	1.51
83348--83522	65	2.6	65	84	7	210	42	4	6	47	1.47
83456--83522	31	2.2	31	100	0	134	41	5	5	46	1.53
83398--83597	105	1.9	107	83	10	266	43	5	5	46	1.48
83398--83664	143	1.9	144	84	10	368	43	5	5	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83720--83755	17	2.2	16	90	5	54	38	0	0	61	0.96

Tables:   1

The End!