Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001230.1 Hibiscus syriacus cultivar Beakdansim tig00002423_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104821

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1187--1240
21
2.5
22
88
5
76
62
7
0
29
1.22
8450--8484
6
5.8
6
96
0
61
45
0
17
37
1.48
24634--24685
24
2.2
24
86
6
70
19
21
34
25
1.96
25767--25817
3
17.0
3
100
0
102
66
0
0
33
0.92
28037--28076
21
1.9
21
85
10
55
32
0
5
62
1.17
29726--29847
59
2.0
60
89
9
187
26
22
14
36
1.93
34206--34261
20
2.8
20
78
10
69
35
19
5
39
1.75
36323--36579
127
2.0
126
93
1
435
42
5
11
40
1.64
40035--40070
18
2.0
18
100
0
72
16
11
27
44
1.82
48800--48841
17
2.6
16
75
17
50
42
0
2
54
1.13
48767--48818
27
2.0
26
85
7
70
51
0
1
46
1.12
48813--49017
83
2.5
83
95
2
367
45
4
3
46
1.41
48874--49005
41
3.2
41
67
14
126
46
5
3
44
1.41
49215--49283
29
2.3
31
85
5
97
57
2
0
39
1.13
52844--55747
120
24.2
120
93
1
4728
34
19
13
31
1.91
61732--61781
14
3.9
14
80
20
72
8
12
26
54
1.64
61741--61788
10
4.4
10
78
19
51
8
12
25
54
1.65
61733--61788
24
2.3
24
100
0
112
8
12
23
55
1.65
62819--62893
10
7.7
10
69
21
61
9
12
21
57
1.62
62825--62889
16
4.1
16
95
0
121
7
12
23
56
1.61
62959--62989
16
1.9
16
100
0
62
6
12
22
58
1.58
70033--70121
29
3.0
30
76
15
87
50
2
2
44
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75932--75966
18
2.0
18
88
5
54
68
0
0
31
0.90
78410--78464
26
2.1
27
83
10
69
49
0
1
49
1.11
85214--85241
12
2.3
12
100
0
56
32
17
35
14
1.90
104212--104242
2
16.0
2
93
6
55
48
0
0
51
1.00

Tables:   1

The End!