Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001232.1 Hibiscus syriacus cultivar Beakdansim tig00002426_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82487

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4140--4219
38
2.1
37
84
9
99
57
2
13
26
1.49
8233--8274
20
2.1
20
86
8
59
66
9
0
23
1.21
10704--10742
19
2.1
19
90
0
60
43
7
2
46
1.46
15144--15197
14
3.9
14
79
16
51
31
25
14
27
1.95
15144--15198
13
4.0
14
78
21
55
30
27
14
27
1.95
17324--17404
24
3.4
24
80
0
90
17
14
18
49
1.80
29071--29115
21
2.1
21
100
0
90
26
13
26
33
1.93
46855--46884
12
2.4
13
94
5
53
36
0
3
60
1.14
48604--48674
29
2.4
29
97
0
133
21
25
33
19
1.97
48668--48692
12
2.1
12
100
0
50
16
0
60
24
1.36
48732--48799
35
1.9
35
93
0
118
27
30
16
25
1.96
49232--49275
21
2.1
21
86
0
61
29
0
18
52
1.46
49678--49704
14
1.9
14
100
0
54
7
3
14
74
1.18
49675--49707
17
1.9
17
88
11
50
9
3
15
72
1.21
49800--49843
23
1.9
23
85
0
61
40
0
9
50
1.34
50073--50137
26
2.6
25
79
13
62
50
6
1
41
1.36
53034--53509
26
19.2
26
75
12
356
43
2
9
44
1.49
52976--53493
124
4.2
124
97
0
943
43
2
9
44
1.49
53031--53374
150
2.3
145
83
11
412
44
2
10
43
1.52
53468--53509
14
3.1
14
86
3
59
45
2
4
47
1.36
53714--53746
17
1.9
17
93
0
57
36
6
12
45
1.66
55896--55926
15
2.1
14
94
5
53
54
6
0
38
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55901--55947
16
3.0
16
84
9
53
59
10
0
29
1.31
55988--56068
33
2.5
33
84
11
98
49
12
0
38
1.41
56109--56199
44
2.0
48
85
12
129
48
10
0
40
1.38
56180--56268
41
2.2
40
78
8
90
46
10
1
42
1.45
56304--56342
16
2.3
18
86
8
55
56
5
0
38
1.22
56573--56670
50
2.0
49
97
2
187
23
19
38
18
1.93
56705--56799
29
3.3
29
95
0
163
23
32
30
13
1.93
56786--56864
32
2.5
32
95
0
149
10
34
27
27
1.89
56958--57017
29
2.1
29
93
0
102
20
28
26
25
1.99
63809--63845
18
2.1
18
94
0
65
29
18
5
45
1.72
66518--66560
15
2.9
15
85
0
59
34
44
4
16
1.68
66822--66882
32
1.9
32
96
0
113
39
8
13
39
1.74
71142--71561
106
4.0
106
92
0
678
22
17
23
35
1.95
72101--72125
12
2.1
12
100
0
50
32
16
24
28
1.96
73000--73035
18
2.0
18
88
0
54
47
30
2
19
1.64
77558--77604
6
7.3
6
81
13
58
78
0
0
21
0.75
77559--77604
10
4.7
10
82
12
60
78
0
0
21
0.76
77560--77605
16
2.8
16
84
15
67
76
0
0
23
0.79
77558--77603
13
3.5
13
80
11
58
78
0
0
21
0.76
81756--81796
21
2.1
18
86
13
55
39
0
0
60
0.96
81761--81811
24
2.3
21
83
12
59
47
3
0
49
1.20

Tables:   1

The End!