genome.fa.s1234.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001234.1 Hibiscus syriacus cultivar Beakdansim tig00002429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108598

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1435--1523	41	2.2	41	95	4	162	23	17	10	48	1.78
8823--8995	90	1.9	91	84	5	235	28	17	23	30	1.97
9567--9698	26	5.1	24	76	18	108	0	19	0	79	0.78
9582--9693	14	8.3	14	75	15	92	0	20	0	78	0.80
9567--9683	19	6.0	20	76	14	102	0	19	0	79	0.78
9574--9698	5	24.8	5	72	24	95	0	20	0	79	0.79
9567--9698	65	2.0	64	87	9	189	0	19	0	79	0.78
9575--9702	48	2.7	46	80	13	143	0	20	0	78	0.79
12232--12264	8	4.2	8	92	3	50	57	9	21	12	1.62
15225--15272	22	2.2	22	84	0	60	16	39	20	22	1.92
15995--16035	3	13.7	3	90	10	66	63	0	0	36	0.95
18807--18873	30	2.2	31	86	2	91	32	23	20	22	1.98
18820--18906	31	2.8	31	84	5	97	31	20	19	28	1.97
18829--18957	31	4.2	29	75	20	93	32	17	20	29	1.96
18851--18957	31	3.4	32	75	15	107	34	16	18	29	1.94
19252--19312	2	30.0	2	96	3	113	49	1	0	49	1.10
21209--21237	7	4.1	7	100	0	58	27	0	44	27	1.54
23172--23202	2	15.5	2	100	0	62	51	0	0	48	1.00
30894--31268	2	201.5	2	67	26	170	40	1	5	53	1.32
30904--31271	74	5.1	70	75	18	232	39	1	5	53	1.31
30893--31268	19	20.4	18	70	22	193	40	1	5	53	1.32
31148--31256	25	4.6	24	80	18	122	43	2	1	52	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31235--31287	14	3.7	14	82	12	63	35	0	0	64	0.94
30997--31288	21	14.1	21	67	22	76	39	1	3	55	1.25
32486--32541	17	3.4	17	95	2	96	17	44	23	14	1.85
32505--32548	23	2.0	22	90	4	70	18	45	25	11	1.82
32532--32567	7	5.4	7	90	9	58	16	30	30	22	1.96
32532--32563	13	2.5	13	100	0	64	15	31	31	21	1.95
33437--33560	63	2.0	63	82	9	155	16	27	29	26	1.97
33437--33560	31	4.0	32	72	12	80	16	27	29	26	1.97
39767--39835	10	7.1	10	77	12	81	18	23	28	28	1.98
39767--39837	19	3.7	19	94	1	115	18	25	28	28	1.98
39832--39887	17	3.4	17	95	2	96	17	44	23	14	1.85
39851--39894	23	2.0	22	90	4	70	18	45	25	11	1.82
39878--39913	7	5.4	7	90	9	58	16	30	30	22	1.96
39878--39909	13	2.5	13	100	0	64	15	31	31	21	1.95
40783--40906	63	2.0	63	82	9	155	16	27	29	26	1.97
40783--40906	31	4.0	32	72	12	80	16	27	29	26	1.97
45575--45619	20	2.1	21	84	8	56	62	0	0	37	0.96
47301--47399	32	3.1	32	83	0	117	28	26	24	21	1.99
49088--49171	32	2.6	31	81	7	96	27	23	26	22	2.00
49098--49186	32	2.8	32	82	0	106	26	28	23	21	1.99
57459--57894	36	12.3	37	77	10	206	45	3	5	45	1.42
57530--57608	2	39.5	2	100	0	158	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57594--57894	36	8.4	34	79	11	245	45	4	5	43	1.48
57919--57964	11	4.1	11	83	5	56	17	6	0	76	1.00
57909--57956	15	3.3	15	82	2	53	18	6	0	75	1.01
59285--59425	12	11.8	12	71	15	80	17	5	2	74	1.13
59287--59357	5	13.8	5	72	16	56	16	5	0	77	0.95
63348--63440	9	10.9	8	73	11	53	76	2	8	12	1.10
63343--63437	20	4.8	20	71	11	63	75	2	9	12	1.12
63602--63649	22	2.1	22	81	14	62	66	2	2	29	1.14
63693--63729	2	18.5	2	100	0	74	51	0	0	48	1.00
63878--63945	14	4.9	14	71	8	50	77	2	4	14	1.04
63878--63953	9	7.9	9	71	27	50	77	2	5	14	1.05
63878--63954	20	3.8	20	71	19	61	76	2	6	14	1.09
64391--64499	49	2.2	49	98	0	209	14	20	14	50	1.78
65394--65470	33	2.5	29	87	12	102	36	10	16	36	1.83
65383--65497	36	3.6	33	83	14	127	32	9	16	41	1.81
65483--65807	73	4.6	73	79	9	384	40	12	19	27	1.88
65483--65807	36	9.1	36	83	8	380	40	12	19	27	1.88
65518--65779	138	1.9	138	88	1	400	40	12	19	27	1.88
65656--65832	36	4.9	35	88	3	176	38	11	19	29	1.88
67122--67384	95	2.7	94	87	5	350	32	18	15	32	1.93
71193--71287	9	9.8	9	73	18	66	78	2	6	12	1.02
71193--71284	10	8.9	10	71	20	57	79	2	6	11	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71185--71265	28	3.0	26	77	13	76	81	1	6	11	0.92
71186--71287	51	2.0	53	86	7	147	78	1	6	12	1.03
71443--71680	23	10.7	22	66	20	70	67	2	4	25	1.23
71460--71555	18	5.6	18	71	15	78	67	4	2	26	1.19
71460--71574	18	6.7	19	71	21	69	68	4	2	24	1.20
71455--71558	3	33.7	3	74	19	56	67	3	1	26	1.18
71690--71746	14	4.1	14	73	13	55	80	3	1	14	0.92
71690--71747	19	3.0	18	80	14	71	81	3	1	13	0.91
71690--71755	9	6.9	9	75	23	55	80	3	3	13	0.95
71692--71746	8	6.6	8	75	21	51	81	3	1	12	0.89
78251--78328	33	2.4	33	84	2	95	11	6	35	46	1.66
78379--78470	28	3.3	28	77	16	79	14	10	30	44	1.79
78437--78513	32	2.3	32	85	12	102	14	9	35	41	1.77
78437--78503	32	2.1	33	91	2	109	14	8	35	40	1.78
80725--80775	22	2.4	22	71	15	52	47	11	0	41	1.40
82318--82345	2	14.0	2	100	0	56	50	0	0	50	1.00
82692--82724	2	16.5	2	100	0	66	48	0	0	51	1.00
83131--83297	59	2.8	60	78	3	158	32	24	5	37	1.78
83345--83463	60	2.0	60	85	6	161	31	5	29	33	1.79
83350--83481	60	2.2	60	81	5	142	35	4	25	34	1.77
83385--83513	60	2.2	59	80	4	134	36	4	22	36	1.75
87827--88015	58	3.3	58	83	3	211	47	10	12	29	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90351--90379	2	14.5	2	100	0	58	0	48	0	51	1.00
91575--91837	123	2.1	124	84	2	332	30	17	18	33	1.95
98815--98879	20	3.2	20	88	0	94	30	24	10	33	1.90
99288--99549	132	2.0	132	95	0	470	19	26	20	32	1.97
100594--100634	2	20.5	2	100	0	82	51	0	0	48	1.00
100652--100759	23	5.0	21	67	23	71	42	2	0	53	1.21
102230--102270	21	2.0	21	95	0	73	19	4	24	51	1.66
104663--104759	44	2.2	44	79	3	106	39	23	14	22	1.91

Tables:   1

The End!