Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001236.1 Hibiscus syriacus cultivar Beakdansim tig00002432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73259

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12899--12949
26
2.0
26
84
7
68
37
3
23
35
1.74
15347--15409
28
2.2
29
85
2
83
57
1
0
41
1.08
25551--25582
7
4.6
7
96
0
55
15
25
0
59
1.36
37183--37237
21
2.6
21
73
0
56
21
29
20
29
1.98
37227--37274
20
2.4
20
86
6
71
35
25
20
18
1.95
37227--37282
20
2.8
20
83
5
60
33
23
21
21
1.97
38130--38183
24
2.2
24
93
0
90
20
18
20
40
1.91
40609--40697
20
4.4
20
88
2
135
34
24
22
17
1.96
40669--40764
33
2.8
33
90
3
138
41
20
23
13
1.88
40702--40770
19
3.8
19
73
21
76
44
18
21
14
1.85
40779--40874
33
2.9
34
85
6
124
15
22
19
41
1.89
40976--41012
14
2.6
14
86
0
56
48
21
0
29
1.50
42396--42472
21
3.7
21
80
5
75
22
18
37
22
1.94
42365--42472
42
2.6
42
80
5
112
23
18
36
22
1.95
42929--42998
20
3.5
20
86
0
77
40
22
18
18
1.92
43040--43085
20
2.3
20
84
0
65
34
23
21
19
1.96
43130--43293
20
8.5
20
86
8
214
19
18
21
40
1.92
43092--43293
94
2.2
94
88
0
307
18
20
20
40
1.92
43150--43290
74
1.9
74
92
0
237
17
19
21
41
1.90
45168--45235
20
3.4
20
87
0
82
42
25
17
14
1.87
45279--45327
20
2.5
20
93
0
80
18
20
26
34
1.95
45917--45969
20
2.7
20
96
0
97
20
18
20
39
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49244--49287
23
2.0
22
90
4
70
27
0
2
70
0.99
54289--54451
87
1.9
87
93
0
281
42
10
13
33
1.78
54587--55247
182
3.6
182
95
0
1162
28
16
12
42
1.84
57814--58286
181
2.6
180
86
2
651
27
15
13
43
1.84
61229--61265
16
2.2
17
86
13
51
48
0
0
51
1.00
61366--61555
38
4.8
39
85
7
199
44
3
6
45
1.46
61406--61555
38
3.9
39
90
1
214
42
2
7
48
1.42
61406--61555
77
1.9
77
87
0
219
42
2
7
48
1.42
61701--61774
21
3.6
21
72
3
78
22
17
24
35
1.95
61722--61835
20
5.6
20
66
12
70
15
21
22
40
1.91
61786--61857
21
3.5
21
71
17
69
16
19
27
36
1.93
61697--61838
41
3.5
41
87
3
198
18
19
23
38
1.93
61908--61940
6
5.5
6
100
0
66
33
51
15
0
1.43
62435--62471
6
6.5
6
96
3
60
0
16
54
29
1.43
62786--62810
13
1.9
13
100
0
50
40
0
8
52
1.31
62775--62960
38
4.8
39
84
4
225
39
2
6
52
1.39
62774--62947
77
2.2
79
83
5
237
38
2
6
52
1.41
62954--62994
18
2.2
19
95
4
75
17
7
0
75
1.02
63723--64029
149
2.1
149
98
0
596
34
20
16
28
1.94
65492--65536
21
2.1
21
87
0
63
15
24
28
31
1.96

Tables:   1

The End!