genome.fa.s1237.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001237.1 Hibiscus syriacus cultivar Beakdansim tig00002433_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113074

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
884--1030	61	2.3	66	77	9	155	48	7	1	42	1.39
4745--4795	20	2.5	20	96	0	93	19	21	11	47	1.81
8634--8698	32	2.0	32	100	0	130	53	12	12	21	1.70
12604--12659	3	18.0	3	82	14	69	30	0	0	69	0.89
12601--12659	22	2.5	22	89	8	82	30	0	0	69	0.89
13798--13898	24	4.0	25	73	19	68	30	4	1	62	1.27
13859--13922	12	5.2	12	75	20	53	28	4	1	65	1.21
13881--13922	3	14.3	3	80	14	52	26	4	0	69	1.08
13881--13922	15	2.9	15	89	10	61	26	4	0	69	1.08
13923--13948	2	13.0	2	100	0	52	50	0	0	50	1.00
14206--14258	27	2.0	27	88	3	81	47	0	0	52	1.00
16273--16314	7	6.0	7	81	8	50	14	16	14	54	1.71
16273--16314	15	3.0	14	83	10	50	14	16	14	54	1.71
16345--16410	14	4.9	14	70	10	57	24	12	9	54	1.66
18865--18904	12	3.1	14	86	13	52	82	0	17	0	0.67
21034--21253	114	1.9	114	91	0	359	33	15	20	30	1.94
22355--22528	76	2.3	75	84	2	231	30	13	24	31	1.94
23396--23550	54	2.9	53	87	1	202	38	16	23	22	1.93
23914--23991	22	3.5	22	89	0	111	32	15	12	39	1.85
26014--26044	13	2.4	13	94	0	53	16	19	48	16	1.81
26057--26111	10	5.6	10	85	10	78	34	29	21	14	1.93
26057--26112	19	2.9	19	87	10	78	33	28	21	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33296--33326	13	2.4	13	94	0	53	16	19	48	16	1.81
33339--33393	10	5.6	10	85	10	78	34	29	21	14	1.93
33339--33394	19	2.9	19	87	10	78	33	28	21	16	1.95
34131--35956	113	16.2	113	97	1	3423	38	16	18	26	1.92
35884--35947	20	3.2	20	63	20	53	45	9	20	25	1.80
35916--36108	84	2.3	84	85	2	255	38	15	17	29	1.89
36368--36418	3	16.0	3	84	11	66	29	0	0	70	0.87
36365--36418	10	5.9	10	83	16	73	29	0	0	70	0.88
36361--36418	16	3.4	17	84	15	84	29	0	0	70	0.87
37568--37632	12	5.2	12	74	20	53	27	4	1	66	1.20
37590--37632	3	14.3	3	80	9	52	25	4	0	69	1.07
37595--37632	16	2.5	15	91	4	58	23	5	0	71	1.07
37590--37632	13	3.1	15	77	16	56	25	4	0	69	1.07
37920--37974	27	2.0	27	89	0	83	47	0	0	52	1.00
52249--52337	27	3.2	30	61	23	75	57	17	3	21	1.55
52219--52377	54	2.9	55	95	3	284	61	15	3	19	1.49
52458--52791	36	9.6	35	68	18	136	44	3	8	44	1.51
52493--52626	62	2.2	62	81	4	155	45	2	9	41	1.52
52430--52568	36	3.8	37	75	11	119	43	4	10	41	1.58
52471--52654	98	1.9	100	88	5	284	44	3	9	42	1.54
52545--52599	25	2.2	26	81	15	62	38	3	12	45	1.60
52568--52791	37	6.3	37	77	14	188	44	2	6	46	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52599--52791	69	2.8	69	77	12	198	44	2	6	46	1.42
52599--52781	32	5.3	33	73	20	128	45	2	6	45	1.42
54015--54061	17	2.7	18	81	15	55	36	4	0	59	1.17
65025--65082	21	2.8	19	73	21	55	60	0	12	27	1.32
69030--69067	2	19.0	2	100	0	76	50	0	0	50	1.00
69534--69577	18	2.4	18	76	0	52	22	2	27	47	1.63
83587--83781	30	6.5	30	94	0	336	50	1	0	48	1.11
83587--83824	15	15.5	15	85	6	298	47	0	1	49	1.17
83804--84261	32	14.4	32	71	21	261	34	0	12	53	1.38
83769--83869	22	4.5	22	71	7	76	39	0	7	52	1.31
83804--84379	54	10.5	54	70	18	343	34	0	12	52	1.42
83881--83923	22	2.0	22	100	0	86	34	0	13	51	1.42
83849--84359	80	5.9	83	75	16	242	33	0	13	52	1.42
84123--84165	22	2.0	22	95	0	77	37	0	11	51	1.39
84154--84239	14	5.6	14	67	20	55	36	0	8	55	1.29
83907--84373	198	2.4	194	91	4	741	34	0	12	52	1.43
84176--84393	112	1.9	109	79	10	235	33	0	13	52	1.47
84388--84446	31	1.9	31	92	0	100	42	10	6	40	1.65
85718--85754	12	3.1	12	92	0	56	32	18	37	10	1.86
87084--87130	21	2.2	22	85	11	62	29	14	29	25	1.95
88526--88579	23	2.3	23	96	0	99	35	24	27	12	1.92
90666--90708	19	2.3	19	87	0	59	20	23	30	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93148--93204	25	2.3	25	96	0	105	40	21	19	19	1.92
94477--94567	2	45.5	2	100	0	182	49	0	0	50	1.00
95296--95364	27	2.4	29	78	7	70	20	11	15	52	1.74
95337--95465	23	5.5	23	73	5	105	27	14	13	44	1.83
96255--96306	20	2.6	20	93	0	86	40	19	9	30	1.83
105035--105105	31	2.4	29	86	6	90	25	14	15	45	1.84

Tables:   1

The End!