Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001238.1 Hibiscus syriacus cultivar Beakdansim tig00002434_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63956

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2286--2325
21
1.9
21
94
0
71
30
15
7
47
1.72
2320--2418
33
3.0
33
94
1
164
32
7
15
45
1.73
2404--2459
13
4.2
13
76
13
60
35
3
12
48
1.58
2848--2900
15
3.4
15
75
10
61
33
7
11
47
1.68
2994--3025
16
2.0
17
88
11
50
43
21
21
12
1.86
13487--13541
10
5.5
10
82
8
58
69
3
3
23
1.21
13969--14071
33
3.2
33
68
13
104
47
2
4
44
1.39
13970--14102
65
2.0
65
98
0
257
48
3
4
43
1.38
20477--20533
30
2.0
29
86
6
80
70
3
5
21
1.22
20487--20547
30
2.1
30
84
3
79
67
1
3
27
1.16
20584--20635
27
2.0
26
81
11
61
65
3
7
23
1.35
20938--20970
13
2.5
13
100
0
66
36
39
15
9
1.79
21969--22642
84
8.0
84
84
0
751
25
17
23
32
1.97
23074--23176
43
2.4
43
86
0
143
22
15
32
30
1.95
23370--23497
64
2.0
64
90
3
204
32
11
20
35
1.89
24783--24840
23
2.5
23
78
10
64
5
15
1
77
1.02
30401--30459
16
3.7
16
95
0
100
52
1
13
32
1.50
33726--33959
117
2.0
117
99
0
459
40
15
11
32
1.83
36745--36790
23
2.0
23
95
0
83
41
8
19
30
1.82
40085--40210
55
2.3
54
88
2
180
23
22
23
30
1.99
40930--40964
14
2.5
13
86
13
52
42
14
14
28
1.84
42790--42821
12
2.7
12
95
0
55
40
0
43
15
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42900--42955
20
2.8
20
94
0
94
21
21
33
23
1.97
45441--45515
19
3.8
19
91
5
105
13
25
41
20
1.88
45735--45775
21
2.0
21
95
0
73
53
7
7
31
1.56
48983--49053
34
2.2
32
84
5
88
32
14
29
23
1.94
50536--50573
20
2.0
20
89
5
60
47
5
13
34
1.65
52972--53095
63
1.9
65
88
6
191
16
20
29
34
1.94
60669--60697
15
1.9
15
100
0
58
31
20
20
27
1.98

Tables:   1

The End!